Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2DVI
BPC Identified: 14
Ambiguities: 0
| tRNA |
2DVI |
1!B:31!B |
G:C |
WC [cWW][XIX] |
10.89 |
52.47; 54.22 |
1.74 |
-12.09 |
0.38 |
10.54 |
| tRNA |
2DVI |
2!B:30!B |
G:C |
WC [cWW][XIX] |
10.55 |
53.31; 56.72 |
3.4 |
-10.1 |
0.27 |
16.17 |
| tRNA |
2DVI |
3!B:29!B |
C:G |
WC [cWW][XIX] |
10.59 |
54.97; 51.38 |
3.59 |
-11.75 |
0.39 |
20.77 |
| tRNA |
2DVI |
4!B:28!B |
C:G |
WC [cWW][XIX] |
10.67 |
56.42; 54.12 |
2.3 |
-6.58 |
0.03 |
12.33 |
| tRNA |
2DVI |
5!B:27!B |
C:G |
WC [cWW][XIX] |
10.46 |
57.0; 54.3 |
2.7 |
-2.15 |
0.23 |
7.11 |
| tRNA |
2DVI |
6!B:26!B |
G:U |
Wb [cWW][XXVIII] |
10.31 |
50.42; 73.12 |
22.7 |
1.27 |
0.41 |
7.64 |
| tRNA |
2DVI |
7!B:25!B |
G:C |
WC [cWW][XIX] |
10.49 |
49.34; 60.44 |
11.11 |
-5.84 |
0.01 |
7.03 |
| tRNA |
2DVI |
8!B:24!B |
G:C |
WC [cWW][XIX] |
10.64 |
59.88; 48.69 |
11.19 |
-6.66 |
0.01 |
16.01 |
| tRNA |
2DVI |
9!B:23!B |
G:C |
WC [cWW][XIX] |
10.46 |
53.84; 58.88 |
5.04 |
-7.4 |
0.44 |
15.75 |
| tRNA |
2DVI |
10!B:22!B |
C:G |
WC [cWW][XIX] |
10.32 |
55.87; 53.16 |
2.71 |
-2.58 |
0.03 |
6.02 |
| tRNA |
2DVI |
11!B:21!B |
G:C |
WC [cWW][XIX] |
10.75 |
53.13; 50.4 |
2.73 |
-10.88 |
0.09 |
10.61 |
| tRNA |
2DVI |
12!B:20!B |
G:C |
WC [cWW][XIX] |
10.49 |
55.07; 55.07 |
0.0 |
-9.38 |
0.48 |
18.38 |
| tRNA |
2DVI |
13!B:17!B |
U:A |
rH_1 [tWH][XXIV] |
10.05 |
36.45; 11.49 |
24.96 |
155.31 |
0.15 |
8.76 |
| tRNA |
2DVI |
14!B:16!B |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.69 |
84.61; 40.41 |
44.2 |
-175.49 |
1.89 |
22.45 |