Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2DXI BPC Identified: 69 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 2DXI 501!C:572!C G:C WC [cWW][XIX] 10.99 49.03; 49.75 0.71 -13.65 0.01 18.85
tRNA 2DXI 502!C:571!C G:U Wb [cWW][XXVIII] 10.53 39.93; 66.44 26.51 -11.98 0.07 15.25
tRNA 2DXI 503!C:570!C C:G WC [cWW][XIX] 10.86 51.78; 52.58 0.81 -11.94 0.37 19.26
tRNA 2DXI 504!C:569!C C:G WC [cWW][XIX] 10.68 53.62; 53.75 0.13 -6.43 0.23 11.64
tRNA 2DXI 505!C:568!C C:G WC [cWW][XIX] 10.86 52.02; 51.99 0.03 -5.79 0.12 15.17
tRNA 2DXI 506!C:567!C C:G WC [cWW][XIX] 10.61 56.06; 52.94 3.12 -7.45 0.0 9.82
tRNA 2DXI 507!C:566!C A:U WC [cWW][XX] 11.06 52.75; 50.29 2.46 -3.13 0.07 9.5
tRNA 2DXI 508!C:521!C U:A fS(sb:O2*-N1) [tSW][-] 8.29 95.8; 60.57 35.23 159.26 0.03 24.0
tRNA 2DXI 508!C:514!C U:A rH_1 [tWH][XXIV] 9.7 33.47; 17.34 16.13 160.87 0.5 17.47
tRNA 2DXI 509!C:524!C C:A rS* [tHH][-] 11.9 40.36; 13.11 27.25 -52.1 1.92 19.31
tRNA 2DXI 509!C:523!C C:G rS*_1 [tHH][-] 11.8 14.13; 7.68 6.45 112.73 0.57 12.11
tRNA 2DXI 510!C:525!C G:C WC [cWW][XIX] 10.67 52.16; 54.71 2.55 0.72 0.25 8.88
tRNA 2DXI 511!C:524!C U:A WC [cWW][XX] 10.28 57.5; 58.85 1.35 -4.54 0.25 10.86
tRNA 2DXI 512!C:523!C C:G WC [cWW][XIX] 10.57 56.97; 54.77 2.2 -2.6 0.09 6.87
tRNA 2DXI 513!C:522!C U:G Wb [cWW][XXVIII] 10.29 71.88; 46.26 25.62 0.04 0.32 8.17
tRNA 2DXI 514!C:521!C A:A pfS [cSW][-] 9.42 34.54; 124.27 89.73 -11.45 0.29 9.83
tRNA 2DXI 515!C:548!C G:C rWb [tWW][XXII] 10.85 40.62; 56.0 15.38 -169.42 0.38 5.18
tRNA 2DXI 518!C:555!C G:U fS_1 [tSW][-] 8.68 30.12; 106.46 76.34 -141.45 0.62 15.75
tRNA 2DXI 519!C:556!C G:C WC [cWW][XIX] 10.72 58.55; 53.99 4.55 -20.15 0.91 42.47
tRNA 2DXI 520!C:548!C U:C rH* [---][-] 13.15 7.82; 14.77 6.95 93.26 0.98 21.99
tRNA 2DXI 522!C:546!C G:A rH*_1 [tHW][-] 12.23 15.97; 23.21 7.24 -178.41 0.26 12.77
tRNA 2DXI 526!C:544!C G:A WC [cWW][VIII] 12.65 46.47; 49.26 2.79 -15.98 0.53 30.92
tRNA 2DXI 527!C:543!C C:G WC [cWW][XIX] 10.61 54.37; 55.27 0.9 -16.82 0.86 31.21
tRNA 2DXI 528!C:542!C G:C WC [cWW][XIX] 10.45 54.98; 57.23 2.26 -6.78 0.07 12.89
tRNA 2DXI 529!C:541!C G:C WC [cWW][XIX] 10.46 53.3; 56.49 3.2 -5.23 0.16 9.89
tRNA 2DXI 530!C:540!C C:G WC [cWW][XIX] 10.37 60.88; 51.85 9.03 -9.71 0.06 12.77
tRNA 2DXI 531!C:539!C C:G WC [cWW][XIX] 10.55 56.6; 53.97 2.63 -10.11 0.3 15.48
tRNA 2DXI 532!C:538!C C:A sWb [---][-] 10.95 82.33; 28.29 54.04 -6.71 0.33 16.88
tRNA 2DXI 549!C:565!C G:C WC [cWW][XIX] 11.01 53.65; 58.05 4.4 -4.46 0.7 18.29
tRNA 2DXI 550!C:564!C G:C WC [cWW][XIX] 10.76 52.06; 55.16 3.1 0.7 0.5 15.11
tRNA 2DXI 551!C:563!C G:C WC [cWW][XIX] 10.45 55.59; 57.48 1.88 4.39 0.27 6.82
tRNA 2DXI 552!C:562!C G:C WC [cWW][XIX] 10.56 56.14; 55.01 1.13 -1.24 0.16 9.72
tRNA 2DXI 553!C:561!C G:C WC [cWW][XIX] 10.64 46.88; 54.16 7.28 -8.76 0.41 7.04
tRNA 2DXI 554!C:558!C U:A rH_1 [tWH][XXIV] 9.9 31.44; 18.24 13.2 176.57 0.65 6.51
tRNA 2DXI 501!D:572!D G:C WC [cWW][XIX] 10.76 47.93; 50.34 2.4 -18.75 0.31 18.2
tRNA 2DXI 502!D:571!D G:U Wb [cWW][XXVIII] 10.56 38.86; 65.75 26.89 -15.35 0.16 15.76
tRNA 2DXI 503!D:570!D C:G WC [cWW][XIX] 10.83 51.21; 52.07 0.87 -13.14 0.52 20.54
tRNA 2DXI 504!D:569!D C:G WC [cWW][XIX] 10.67 54.71; 53.65 1.06 -6.64 0.17 10.85
tRNA 2DXI 505!D:568!D C:G WC [cWW][XIX] 10.75 52.33; 52.45 0.12 -6.17 0.4 12.96
tRNA 2DXI 506!D:567!D C:G WC [cWW][XIX] 10.55 55.44; 52.55 2.89 -5.66 0.16 8.77
tRNA 2DXI 507!D:566!D A:U WC [cWW][XX] 10.97 54.88; 50.56 4.32 1.36 0.34 8.15
tRNA 2DXI 508!D:546!D U:A rpS(sb:O2*-N3) [cSS][-] 5.6 122.54; 87.83 34.71 -65.05 2.36 18.48
tRNA 2DXI 508!D:521!D U:A fS(sb:O2*-N1) [tSW][-] 8.3 95.47; 61.29 34.19 159.72 0.04 24.15
tRNA 2DXI 508!D:514!D U:A rH_1 [tWH][XXIV] 9.65 32.99; 17.84 15.15 159.64 0.59 18.36
tRNA 2DXI 509!D:524!D C:A rS* [tHH][-] 11.9 41.38; 13.01 28.37 -46.62 1.81 23.45
tRNA 2DXI 509!D:523!D C:G rS*_1 [tHH][-] 11.83 14.97; 7.41 7.56 112.48 0.64 16.2
tRNA 2DXI 510!D:525!D G:C WC [cWW][XIX] 10.62 52.14; 56.14 4.0 4.25 0.21 7.27
tRNA 2DXI 511!D:524!D U:A WC [cWW][XX] 10.25 58.03; 59.39 1.36 -3.67 0.21 9.64
tRNA 2DXI 512!D:523!D C:G WC [cWW][XIX] 10.52 57.2; 54.76 2.45 -2.57 0.02 5.79
tRNA 2DXI 513!D:522!D U:G Wb [cWW][XXVIII] 10.24 72.63; 45.58 27.05 1.24 0.21 5.5
tRNA 2DXI 514!D:521!D A:A pfS [cSW][-] 9.42 34.26; 124.83 90.57 -10.32 0.19 10.01
tRNA 2DXI 515!D:548!D G:C rWb [tWW][XXII] 10.8 41.36; 56.86 15.5 -172.16 0.19 3.86
tRNA 2DXI 518!D:555!D G:U fS_1 [tSW][-] 8.81 32.05; 108.01 75.96 -144.63 0.59 14.76
tRNA 2DXI 519!D:556!D G:C WC [cWW][XIX] 10.81 60.47; 53.38 7.09 -20.11 0.98 43.24
tRNA 2DXI 520!D:548!D U:C rH* [---][-] 12.87 9.01; 15.01 6.01 92.46 1.06 21.95
tRNA 2DXI 522!D:546!D G:A rH*_1 [tHW][-] 12.15 16.84; 22.79 5.95 -178.06 0.15 14.92
tRNA 2DXI 526!D:544!D G:A WC [cWW][VIII] 12.66 46.75; 49.39 2.64 -16.55 0.73 27.6
tRNA 2DXI 527!D:543!D C:G WC [cWW][XIX] 10.58 54.05; 56.42 2.37 -18.09 0.87 31.25
tRNA 2DXI 528!D:542!D G:C WC [cWW][XIX] 10.44 55.0; 56.07 1.07 -6.52 0.06 13.17
tRNA 2DXI 529!D:541!D G:C WC [cWW][XIX] 10.47 52.12; 56.88 4.76 -6.04 0.22 12.18
tRNA 2DXI 530!D:540!D C:G WC [cWW][XIX] 10.41 60.62; 51.0 9.61 -8.77 0.03 13.79
tRNA 2DXI 531!D:539!D C:G WC [cWW][XIX] 10.59 56.08; 52.53 3.56 -11.76 0.17 15.08
tRNA 2DXI 532!D:538!D C:A sWb [---][-] 11.01 80.88; 27.46 53.43 -7.79 0.46 15.12
tRNA 2DXI 549!D:565!D G:C WC [cWW][XIX] 10.25 53.59; 59.04 5.45 -2.08 0.39 15.2
tRNA 2DXI 550!D:564!D G:C WC [cWW][XIX] 10.8 52.1; 55.5 3.4 -0.98 0.63 15.02
tRNA 2DXI 551!D:563!D G:C WC [cWW][XIX] 10.47 55.48; 57.71 2.23 4.67 0.37 9.73
tRNA 2DXI 552!D:562!D G:C WC [cWW][XIX] 10.57 56.21; 54.5 1.72 -1.78 0.29 7.98
tRNA 2DXI 553!D:561!D G:C WC [cWW][XIX] 10.87 46.63; 53.48 6.84 -8.26 0.1 9.12
tRNA 2DXI 554!D:558!D U:A rH_1 [tWH][XXIV] 9.89 30.81; 18.45 12.35 177.1 0.64 6.92