Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2GCS BPC Identified: 76 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswtich 2GCS 0!A:65!B A:G rS [tSS][-] 7.98 65.65; 89.81 24.16 156.16 1.11 26.19
Riboswtich 2GCS 2!A:64!B C:G WC [cWW][XIX] 10.66 56.39; 55.92 0.47 4.44 0.15 3.62
Riboswtich 2GCS 3!A:63!B G:C WC [cWW][XIX] 10.53 52.73; 56.48 3.76 -5.06 0.0 8.69
Riboswtich 2GCS 4!A:62!B C:G WC [cWW][XIX] 10.57 55.69; 54.28 1.42 -7.37 0.01 10.64
Riboswtich 2GCS 5!A:61!B C:G WC [cWW][XIX] 10.64 55.25; 53.28 1.97 4.66 0.09 1.48
Riboswtich 2GCS 7!A:60!B G:C WC [cWW][XIX] 10.54 55.32; 56.37 1.05 2.59 0.02 6.97
Riboswtich 2GCS 7!A:34!B G:G S_1 [tSH][-] 11.49 7.69; 83.01 75.32 31.74 0.18 8.05
Riboswtich 2GCS 8!A:58!B G:A rS [tSS][-] 8.17 87.34; 62.05 25.29 129.38 1.48 56.16
Riboswtich 2GCS 8!A:33!B G:U Wb [cWW][XXVIII] 11.08 32.68; 60.69 28.02 -6.68 0.69 28.36
Riboswtich 2GCS 9!A:32!B A:U WC [cWW][XX] 10.5 53.86; 53.97 0.11 -12.46 0.81 23.9
Riboswtich 2GCS 10!A:117!B C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.9 108.35; 145.93 37.58 -38.14 2.23 3.75
Riboswtich 2GCS 10!A:31!B C:G WC [cWW][XIX] 10.55 56.09; 54.28 1.81 -11.27 0.16 22.69
Riboswtich 2GCS 11!A:116!B U:G rpS [cSS][-] 5.54 150.57; 100.99 49.58 -61.91 0.36 27.6
Riboswtich 2GCS 11!A:30!B U:A WC [cWW][XX] 10.41 55.15; 56.34 1.19 -13.71 0.33 17.62
Riboswtich 2GCS 12!A:115!B U:C fS(sb:O2*-N3) [---][-] 7.4 167.53; 39.79 127.74 150.9 0.75 40.95
Riboswtich 2GCS 12!A:29!B U:A WC [cWW][XX] 10.47 54.66; 54.39 0.26 -8.85 0.1 10.55
Riboswtich 2GCS 13!A:28!B A:U WC [cWW][XX] 10.47 56.01; 55.82 0.2 -13.09 0.0 16.92
Riboswtich 2GCS 14!A:27!B A:U WC [cWW][XX] 10.43 54.11; 55.26 1.15 -11.73 0.35 18.11
Riboswtich 2GCS 15!A:26!B A:U WC [cWW][XX] 10.36 56.06; 55.11 0.96 -9.95 0.36 17.77
Riboswtich 2GCS 16!A:25!B G:C WC [cWW][XIX] 10.5 55.62; 57.43 1.81 -6.83 0.11 10.6
Riboswtich 2GCS 17!A:24!B C:G WC [cWW][XIX] 10.45 64.7; 54.06 10.64 -9.42 0.04 16.07
Riboswtich 2GCS 18!A:23!B C:G WC [cWW][XIX] 10.61 59.32; 50.94 8.38 -3.67 0.14 5.69
Riboswtich 2GCS 31!B:117!B G:A rS [tSS][-] 8.42 88.21; 57.83 30.39 159.53 0.82 24.68
Riboswtich 2GCS 32!B:118!B U:C rS(ss:O2*-O2*) [---][-] 5.87 160.57; 158.2 2.36 -142.98 0.59 16.05
Riboswtich 2GCS 35!B:36!B A:C pS* [cHS][-] 6.85 142.75; 39.99 102.76 31.58 0.24 31.98
Riboswtich 2GCS 36!B:105!B C:A rpS(sb:O2*-N3) [cSS][-] 5.45 133.25; 91.84 41.41 -84.5 0.97 61.46
Riboswtich 2GCS 36!B:53!B C:G WC [cWW][XIX] 10.53 57.27; 53.3 3.97 -1.29 0.28 13.39
Riboswtich 2GCS 37!B:127!B G:A fS [tSW][X] 10.09 100.42; 48.41 52.01 110.85 0.99 65.23
Riboswtich 2GCS 37!B:104!B G:A rpS(sb:O2*-N3) [---][-] 5.72 139.41; 88.84 50.58 -72.6 1.54 62.13
Riboswtich 2GCS 37!B:52!B G:C WC [cWW][XIX] 10.59 52.88; 57.51 4.62 -8.1 0.07 9.09
Riboswtich 2GCS 38!B:51!B A:U WC [cWW][XX] 10.23 57.82; 56.94 0.88 -9.27 0.04 11.68
Riboswtich 2GCS 42!B:73!B C:G WC [cWW][XIX] 10.6 55.68; 53.12 2.56 -9.28 0.16 11.47
Riboswtich 2GCS 43!B:72!B A:U WC [cWW][XX] 10.3 58.67; 56.65 2.02 -9.61 0.21 11.64
Riboswtich 2GCS 44!B:71!B G:C WC [cWW][XIX] 10.59 54.5; 54.94 0.44 -7.06 0.05 12.2
Riboswtich 2GCS 45!B:70!B G:C WC [cWW][XIX] 10.53 54.41; 52.66 1.74 -8.18 0.21 15.31
Riboswtich 2GCS 46!B:69!B G:C WC [cWW][XIX] 10.58 57.09; 51.75 5.34 -13.36 0.6 33.77
Riboswtich 2GCS 47!B:68!B U:G Wb [cWW][XXVIII] 10.55 66.0; 38.64 27.36 -11.22 0.21 18.76
Riboswtich 2GCS 48!B:50!B U:A H_1 [cWH][XXIII] 7.84 71.53; 50.66 20.87 7.93 0.21 3.03
Riboswtich 2GCS 52!B:128!B C:G rpS [cSS][-] 5.64 131.8; 99.8 32.01 -93.36 0.06 58.17
Riboswtich 2GCS 53!B:127!B G:A rpS(sb:O2*-N3) [---][-] 5.78 140.71; 88.83 51.87 -75.27 1.55 65.56
Riboswtich 2GCS 53!B:104!B G:A fS [tSW][X] 10.01 100.74; 45.8 54.94 112.84 1.13 62.25
Riboswtich 2GCS 54!B:106!B A:A rS(sb:O2*-N1)_1 [tSS][-] 7.78 94.69; 54.33 40.36 166.21 0.54 40.01
Riboswtich 2GCS 54!B:59!B A:U rWC [tWW][XXI] 11.25 30.16; 40.49 10.33 -163.61 0.46 12.01
Riboswtich 2GCS 74!B:90!B C:G WC [cWW][XIX] 10.73 54.88; 53.25 1.63 -11.39 0.22 14.26
Riboswtich 2GCS 75!B:93!B G:A rS [tSS][-] 8.09 85.9; 56.62 29.27 146.52 1.38 47.16
Riboswtich 2GCS 75!B:89!B G:C WC [cWW][XIX] 10.59 53.92; 54.28 0.37 -19.89 0.28 26.29
Riboswtich 2GCS 76!B:88!B G:C WC [cWW][XIX] 10.7 53.75; 53.37 0.38 -11.52 0.24 12.27
Riboswtich 2GCS 77!B:87!B U:A WC [cWW][XX] 10.52 54.94; 55.25 0.31 -12.25 0.02 14.69
Riboswtich 2GCS 78!B:86!B C:G WC [cWW][XIX] 10.58 56.46; 52.96 3.49 -7.56 0.41 13.99
Riboswtich 2GCS 79!B:81!B U:C H_2 [---][-] 9.16 92.35; 29.25 63.11 -40.87 2.24 50.82
Riboswtich 2GCS 80!B:144!B U:A WC [cWW][XX] 10.98 52.54; 54.09 1.55 -13.91 0.32 18.13
Riboswtich 2GCS 81!B:143!B C:G WC [cWW][XIX] 10.4 57.91; 54.89 3.02 -10.8 0.41 17.36
Riboswtich 2GCS 82!B:142!B C:G WC [cWW][XIX] 10.6 55.62; 55.4 0.23 -6.58 0.02 10.96
Riboswtich 2GCS 83!B:141!B U:A WC [cWW][XX] 10.48 55.62; 57.01 1.39 -7.97 0.09 11.24
Riboswtich 2GCS 84!B:140!B G:C WC [cWW][XIX] 10.59 53.53; 53.78 0.24 -5.32 0.01 10.42
Riboswtich 2GCS 85!B:139!B C:G WC [cWW][XIX] 10.39 57.64; 56.89 0.75 -6.98 0.19 13.25
Riboswtich 2GCS 89!B:93!B C:A rpS(bs:O2-O2*) [cSS][-] 5.8 103.32; 147.78 44.46 -39.22 1.33 22.07
Riboswtich 2GCS 90!B:91!B G:U pS* [cHS][-] 6.18 133.95; 58.81 75.14 43.55 0.76 41.42
Riboswtich 2GCS 95!B:137!B A:G S [tSH][XI] 9.49 10.8; 98.8 88.0 -16.93 0.43 9.79
Riboswtich 2GCS 96!B:136!B G:C WC [cWW][XIX] 10.46 54.11; 59.02 4.91 -2.69 0.03 7.3
Riboswtich 2GCS 97!B:135!B G:C WC [cWW][XIX] 10.39 53.19; 58.35 5.17 2.01 0.04 5.67
Riboswtich 2GCS 98!B:134!B A:U WC [cWW][XX] 10.36 57.47; 57.48 0.0 -7.34 0.18 9.73
Riboswtich 2GCS 99!B:133!B C:G WC [cWW][XIX] 10.38 57.82; 55.63 2.19 -9.62 0.39 9.96
Riboswtich 2GCS 100!B:132!B U:A WC [cWW][XX] 10.13 60.25; 57.75 2.5 -13.87 0.13 15.16
Riboswtich 2GCS 101!B:131!B G:C WC [cWW][XIX] 10.51 56.89; 53.39 3.5 -13.96 0.42 20.41
Riboswtich 2GCS 102!B:129!B G:A S [tSH][XI] 10.61 77.37; 24.3 53.07 -171.91 0.15 7.76
Riboswtich 2GCS 105!B:126!B A:U rH_1 [tWH][XXIV] 10.03 17.3; 34.15 16.85 169.19 0.06 2.93
Riboswtich 2GCS 106!B:125!B A:A rH [tWH][V] 12.14 21.21; 22.5 1.29 139.77 0.44 16.02
Riboswtich 2GCS 107!B:124!B A:C rH_1 [rWH][XXV] 11.14 4.91; 32.85 27.94 69.45 0.41 42.87
Riboswtich 2GCS 108!B:123!B C:G WC [cWW][XIX] 10.59 53.52; 55.18 1.66 -12.13 0.51 24.59
Riboswtich 2GCS 109!B:122!B C:G WC [cWW][XIX] 10.66 53.06; 52.16 0.91 -11.6 0.05 13.61
Riboswtich 2GCS 110!B:121!B A:U WC [cWW][XX] 10.61 54.07; 54.14 0.08 -12.49 0.04 16.47
Riboswtich 2GCS 111!B:120!B C:G WC [cWW][XIX] 10.63 55.8; 52.1 3.7 -9.78 0.14 14.33
Riboswtich 2GCS 112!B:119!B A:U WC [cWW][XX] 10.22 58.07; 58.72 0.65 -6.8 0.03 10.28
Riboswtich 2GCS 113!B:118!B G:C WC [cWW][XIX] 10.58 55.27; 56.26 0.99 4.57 0.21 1.63
Riboswtich 2GCS 114!B:117!B G:A S_mo [tSH][XI] 9.98 85.21; 22.54 62.66 -147.22 0.43 22.87