Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2GCV BPC Identified: 75 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswtich 2GCV 2!A:64!B C:G WC [cWW][XIX] 10.51 55.85; 56.15 0.3 -0.15 0.06 7.81
Riboswtich 2GCV 3!A:63!B G:C WC [cWW][XIX] 10.49 52.51; 57.08 4.57 -3.26 0.12 5.51
Riboswtich 2GCV 4!A:62!B C:G WC [cWW][XIX] 10.53 56.89; 54.29 2.6 -5.03 0.09 7.3
Riboswtich 2GCV 5!A:61!B C:G WC [cWW][XIX] 10.7 55.43; 54.76 0.68 1.25 0.08 0.73
Riboswtich 2GCV 7!A:60!B G:C WC [cWW][XIX] 10.53 54.87; 56.49 1.61 -0.82 0.03 5.82
Riboswtich 2GCV 7!A:34!B G:G S_1 [tSH][-] 11.42 6.84; 82.75 75.92 19.84 0.06 8.44
Riboswtich 2GCV 8!A:58!B G:A rS [tSS][-] 8.12 87.92; 61.48 26.43 127.8 1.35 60.18
Riboswtich 2GCV 8!A:33!B G:U Wb [cWW][XXVIII] 11.09 33.66; 59.61 25.95 -5.93 0.68 24.79
Riboswtich 2GCV 9!A:32!B A:U WC [cWW][XX] 10.43 52.8; 54.7 1.91 -10.63 0.78 21.11
Riboswtich 2GCV 10!A:117!B C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.93 109.32; 145.01 35.7 -36.52 1.87 3.16
Riboswtich 2GCV 10!A:31!B C:G WC [cWW][XIX] 10.44 56.44; 54.76 1.67 -12.41 0.17 21.74
Riboswtich 2GCV 11!A:116!B U:G rpS [cSS][-] 5.61 150.67; 99.42 51.25 -61.99 0.23 27.49
Riboswtich 2GCV 11!A:30!B U:A WC [cWW][XX] 10.35 56.33; 56.09 0.24 -11.68 0.29 15.53
Riboswtich 2GCV 12!A:115!B U:C fS(sb:O2*-N3) [---][-] 7.41 166.32; 39.0 127.33 148.8 0.76 38.54
Riboswtich 2GCV 12!A:29!B U:A WC [cWW][XX] 10.32 56.17; 54.33 1.84 -9.06 0.12 12.87
Riboswtich 2GCV 13!A:28!B A:U WC [cWW][XX] 10.2 59.35; 57.0 2.35 -10.93 0.11 15.93
Riboswtich 2GCV 14!A:27!B A:U WC [cWW][XX] 10.41 54.27; 57.49 3.22 -9.64 0.44 16.89
Riboswtich 2GCV 15!A:26!B A:U WC [cWW][XX] 10.28 58.58; 55.3 3.28 -9.27 0.05 14.09
Riboswtich 2GCV 16!A:25!B G:C WC [cWW][XIX] 10.41 55.7; 56.22 0.52 -8.52 0.13 13.04
Riboswtich 2GCV 17!A:24!B C:G WC [cWW][XIX] 10.71 56.95; 53.71 3.24 -6.12 0.19 12.15
Riboswtich 2GCV 18!A:23!B C:G WC [cWW][XIX] 10.65 56.0; 52.97 3.03 -2.98 0.17 4.47
Riboswtich 2GCV 31!B:117!B G:A rS [tSS][-] 8.38 89.28; 57.86 31.42 158.06 0.98 24.89
Riboswtich 2GCV 35!B:36!B A:C pS* [cHS][-] 6.87 142.37; 40.7 101.67 32.51 0.32 32.29
Riboswtich 2GCV 36!B:105!B C:A rpS(sb:O2*-N3) [cSS][-] 5.43 131.71; 93.14 38.58 -83.8 0.69 58.61
Riboswtich 2GCV 36!B:53!B C:G WC [cWW][XIX] 10.58 56.16; 53.3 2.86 -1.74 0.22 9.96
Riboswtich 2GCV 37!B:127!B G:A fS [tSW][X] 10.1 99.9; 47.52 52.38 111.76 0.95 64.94
Riboswtich 2GCV 37!B:104!B G:A rpS(sb:O2*-N3) [---][-] 5.66 140.0; 88.69 51.31 -69.74 1.7 60.84
Riboswtich 2GCV 37!B:52!B G:C WC [cWW][XIX] 10.62 52.98; 57.23 4.24 -4.52 0.23 7.25
Riboswtich 2GCV 38!B:51!B A:U WC [cWW][XX] 10.2 58.08; 59.26 1.18 -6.94 0.19 9.5
Riboswtich 2GCV 42!B:73!B C:G WC [cWW][XIX] 10.67 54.12; 52.13 1.99 -6.97 0.02 10.59
Riboswtich 2GCV 43!B:72!B A:U WC [cWW][XX] 10.2 57.45; 57.15 0.3 -9.18 0.38 15.42
Riboswtich 2GCV 44!B:71!B G:C WC [cWW][XIX] 10.51 52.74; 53.93 1.19 -9.04 0.14 13.67
Riboswtich 2GCV 45!B:70!B G:C WC [cWW][XIX] 10.54 55.28; 53.1 2.18 -7.99 0.23 16.85
Riboswtich 2GCV 46!B:69!B G:C WC [cWW][XIX] 10.57 55.7; 52.52 3.18 -15.13 0.75 31.02
Riboswtich 2GCV 47!B:68!B U:G Wb [cWW][XXVIII] 10.4 66.92; 38.08 28.83 -15.11 0.23 24.96
Riboswtich 2GCV 48!B:50!B U:A H_1 [cWH][XXIII] 7.98 67.37; 52.69 14.68 6.69 0.24 8.52
Riboswtich 2GCV 52!B:128!B C:G rpS [cSS][-] 5.58 132.34; 98.98 33.36 -92.75 0.19 58.05
Riboswtich 2GCV 53!B:127!B G:A rpS(sb:O2*-N3) [---][-] 5.73 140.27; 88.25 52.01 -72.95 1.51 65.71
Riboswtich 2GCV 53!B:104!B G:A fS [tSW][X] 10.02 99.37; 44.7 54.67 114.03 1.04 61.49
Riboswtich 2GCV 54!B:106!B A:A rS(sb:O2*-N1)_1 [tSS][-] 7.73 96.73; 54.32 42.42 167.54 0.48 40.59
Riboswtich 2GCV 54!B:59!B A:U rWC [tWW][XXI] 11.1 30.79; 39.84 9.04 -164.71 0.26 11.14
Riboswtich 2GCV 74!B:90!B C:G WC [cWW][XIX] 10.72 53.06; 53.45 0.39 -11.91 0.1 13.95
Riboswtich 2GCV 75!B:93!B G:A rS [tSS][-] 8.1 86.1; 58.52 27.57 148.43 1.34 47.46
Riboswtich 2GCV 75!B:89!B G:C WC [cWW][XIX] 10.63 54.15; 52.85 1.3 -18.33 0.18 25.16
Riboswtich 2GCV 76!B:88!B G:C WC [cWW][XIX] 10.72 53.73; 53.7 0.03 -9.72 0.27 9.38
Riboswtich 2GCV 77!B:87!B U:A WC [cWW][XX] 10.59 52.85; 54.2 1.35 -12.65 0.07 15.7
Riboswtich 2GCV 78!B:86!B C:G WC [cWW][XIX] 10.56 56.26; 51.96 4.3 -6.39 0.18 10.95
Riboswtich 2GCV 79!B:81!B U:C H_2 [---][-] 9.14 92.0; 29.95 62.05 -41.27 2.38 53.84
Riboswtich 2GCV 80!B:144!B U:A WC [cWW][XX] 10.73 51.38; 51.84 0.46 -15.51 0.53 21.33
Riboswtich 2GCV 81!B:143!B C:G WC [cWW][XIX] 10.51 55.07; 54.61 0.45 -13.47 0.03 16.82
Riboswtich 2GCV 82!B:142!B C:G WC [cWW][XIX] 10.32 58.82; 53.5 5.32 -8.77 0.01 12.82
Riboswtich 2GCV 83!B:141!B U:A WC [cWW][XX] 10.45 53.2; 57.34 4.13 -10.32 0.04 13.88
Riboswtich 2GCV 84!B:140!B G:C WC [cWW][XIX] 10.51 53.67; 56.24 2.57 -7.9 0.1 13.61
Riboswtich 2GCV 85!B:139!B C:G WC [cWW][XIX] 10.47 57.62; 55.65 1.97 -8.49 0.29 14.1
Riboswtich 2GCV 89!B:93!B C:A rpS(bs:O2-O2*) [cSS][-] 5.77 101.52; 149.25 47.73 -44.37 1.23 23.09
Riboswtich 2GCV 90!B:91!B G:U pS* [cHS][-] 6.07 135.2; 56.12 79.08 47.84 0.71 39.23
Riboswtich 2GCV 95!B:137!B A:G S [tSH][XI] 9.49 10.2; 98.14 87.95 -14.64 0.71 12.97
Riboswtich 2GCV 96!B:136!B G:C WC [cWW][XIX] 10.39 54.49; 60.1 5.61 -7.34 0.04 12.16
Riboswtich 2GCV 97!B:135!B G:C WC [cWW][XIX] 10.4 54.06; 57.03 2.97 -1.6 0.01 10.05
Riboswtich 2GCV 98!B:134!B A:U WC [cWW][XX] 10.48 54.07; 55.39 1.33 -6.1 0.11 8.2
Riboswtich 2GCV 99!B:133!B C:G WC [cWW][XIX] 10.47 56.11; 54.81 1.31 -11.79 0.11 16.03
Riboswtich 2GCV 100!B:132!B U:A WC [cWW][XX] 10.19 58.7; 57.79 0.91 -13.73 0.15 14.64
Riboswtich 2GCV 101!B:131!B G:C WC [cWW][XIX] 10.64 57.69; 52.79 4.91 -18.95 0.3 22.04
Riboswtich 2GCV 102!B:129!B G:A S [tSH][XI] 10.86 76.22; 23.09 53.13 175.39 0.31 7.12
Riboswtich 2GCV 105!B:126!B A:U rH_1 [tWH][XXIV] 9.91 16.61; 35.68 19.07 165.58 0.07 5.34
Riboswtich 2GCV 106!B:125!B A:A rH [tWH][V] 12.11 21.21; 24.48 3.27 132.54 0.14 19.19
Riboswtich 2GCV 107!B:124!B A:C rH_2_Mo [---][-] 10.9 3.79; 58.52 54.73 66.75 1.04 39.22
Riboswtich 2GCV 108!B:123!B C:G WC [cWW][XIX] 10.58 54.42; 54.85 0.42 -11.6 0.27 21.47
Riboswtich 2GCV 109!B:122!B C:G WC [cWW][XIX] 10.62 54.0; 52.29 1.71 -10.34 0.11 10.92
Riboswtich 2GCV 110!B:121!B A:U WC [cWW][XX] 10.57 54.63; 54.59 0.04 -12.17 0.11 14.96
Riboswtich 2GCV 111!B:120!B C:G WC [cWW][XIX] 10.52 55.87; 53.31 2.55 -10.24 0.23 16.25
Riboswtich 2GCV 112!B:119!B A:U WC [cWW][XX] 10.18 58.2; 58.22 0.02 -6.63 0.07 10.48
Riboswtich 2GCV 113!B:118!B G:C WC [cWW][XIX] 10.45 54.02; 57.26 3.24 3.54 0.07 2.26
Riboswtich 2GCV 114!B:117!B G:A S_mo [tSH][XI] 9.93 83.42; 21.94 61.47 -149.82 0.35 21.35
Riboswtich 2GCV 114!B:116!B G:G S(sb:O2*-N7)_1 [---][-] 7.43 81.29; 34.44 46.85 -172.62 2.71 25.7