Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2GDI BPC Identified: 86 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 2GDI 10!X:89!X G:C WC [cWW][XIX] 10.7 53.4; 55.86 2.46 -2.39 0.11 12.67
Riboswitch 2GDI 11!X:88!X G:U Wb [cWW][XXVIII] 10.54 40.98; 66.73 25.75 -10.23 0.32 14.05
Riboswitch 2GDI 12!X:87!X A:U WC [cWW][XX] 10.72 54.01; 54.0 0.01 -12.36 0.12 14.82
Riboswitch 2GDI 13!X:86!X C:G WC [cWW][XIX] 10.82 52.91; 50.52 2.39 -10.24 0.22 11.69
Riboswitch 2GDI 14!X:85!X U:A WC [cWW][XX] 10.48 55.09; 54.48 0.6 -0.29 0.42 9.16
Riboswitch 2GDI 15!X:51!X C:G WC [cWW][XIX] 10.77 52.57; 54.42 1.85 -2.78 0.28 12.82
Riboswitch 2GDI 16!X:84!X G:A rpS [cSS][-] 6.03 109.95; 141.08 31.13 -30.04 0.27 14.34
Riboswitch 2GDI 16!X:50!X G:C WC [cWW][XIX] 10.45 55.69; 58.2 2.51 -10.65 0.25 16.99
Riboswitch 2GDI 17!X:56!X G:A rS [tSS][-] 8.24 88.53; 59.3 29.23 177.88 0.03 20.72
Riboswitch 2GDI 17!X:49!X G:C WC [cWW][XIX] 10.43 54.85; 55.58 0.73 -12.19 0.77 24.18
Riboswitch 2GDI 18!X:57!X G:C rS(ss:O2*-O2*) [---][-] 5.18 164.96; 150.81 14.15 -55.9 2.65 38.37
Riboswitch 2GDI 18!X:48!X G:C WC [cWW][XIX] 10.68 54.3; 50.96 3.34 -12.29 0.87 25.49
Riboswitch 2GDI 19!X:47!X G:A WC [cWW][VIII] 13.04 44.64; 43.58 1.06 -8.93 0.3 12.4
Riboswitch 2GDI 19!X:42!X G:G rS [tSS][IV] 8.24 81.32; 74.54 6.78 -165.06 0.3 19.73
Riboswitch 2GDI 20!X:45!X U:A WC [cWW][XX] 10.16 57.7; 56.62 1.08 9.18 0.63 17.19
Riboswitch 2GDI 21!X:71!X G:U rpS [cSS][-] 6.87 102.33; 122.61 20.27 -40.41 0.78 32.14
Riboswitch 2GDI 21!X:38!X G:C WC [cWW][XIX] 10.85 50.07; 52.74 2.67 -4.07 0.56 15.04
Riboswitch 2GDI 22!X:70!X C:A rpS(sb:O2*-N3) [cSS][-] 5.64 135.56; 96.6 38.96 -76.35 0.22 44.88
Riboswitch 2GDI 22!X:37!X C:G WC [cWW][XIX] 10.45 58.32; 54.03 4.29 -10.61 0.32 21.56
Riboswitch 2GDI 23!X:36!X C:G WC [cWW][XIX] 10.77 53.36; 49.92 3.44 5.88 0.13 9.5
Riboswitch 2GDI 24!X:37!X C:G S* [---][-] 8.5 17.29; 123.97 106.68 39.98 0.37 59.0
Riboswitch 2GDI 25!X:35!X U:A WC [cWW][XX] 10.48 53.92; 55.06 1.14 -2.83 0.01 6.07
Riboswitch 2GDI 26!X:34!X U:A WC [cWW][XX] 10.54 52.74; 55.38 2.63 -3.87 0.13 8.05
Riboswitch 2GDI 27!X:33!X C:G WC [cWW][XIX] 10.76 53.09; 52.03 1.07 -1.55 0.14 7.73
Riboswitch 2GDI 28!X:32!X U:U rWb* [tWW][XII] 10.67 31.24; 24.83 6.4 88.03 1.36 38.35
Riboswitch 2GDI 29!X:30!Y G:C WC [cWW][XIX] 10.72 52.59; 54.54 1.95 11.29 0.29 10.0
Riboswitch 2GDI 30!X:29!Y C:G WC [cWW][XIX] 10.62 54.91; 54.7 0.2 12.59 0.29 10.86
Riboswitch 2GDI 37!X:69!X G:A fS [tSW][X] 10.16 111.59; 35.43 76.16 91.69 0.01 55.98
Riboswitch 2GDI 39!X:43!X U:A rH_1 [tWH][XXIV] 9.75 32.11; 19.36 12.75 -164.14 0.2 11.95
Riboswitch 2GDI 41!X:48!X A:C rpS(sb:O2*-N3) [cSS][-] 5.81 96.7; 149.2 52.5 -30.56 1.18 29.35
Riboswitch 2GDI 49!X:56!X C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.8 106.42; 153.41 46.99 -18.78 1.54 34.59
Riboswitch 2GDI 50!X:84!X C:A fS(sb:O2*-N1)_1 [tSS][-] 8.51 93.36; 54.85 38.52 158.03 1.71 28.56
Riboswitch 2GDI 53!X:84!X A:A rS* [tHH][-] 11.01 17.45; 16.84 0.61 88.75 0.31 24.44
Riboswitch 2GDI 56!X:83!X A:G S [tSH][XI] 9.66 1.09; 94.15 93.06 -42.13 0.89 23.61
Riboswitch 2GDI 57!X:82!X C:G WC [cWW][XIX] 10.59 55.28; 53.94 1.33 -11.87 0.49 23.96
Riboswitch 2GDI 58!X:81!X C:G WC [cWW][XIX] 10.61 55.22; 54.86 0.36 -13.19 0.07 16.86
Riboswitch 2GDI 59!X:80!X U:A WC [cWW][XX] 10.77 52.12; 51.02 1.1 -16.53 0.32 19.61
Riboswitch 2GDI 60!X:78!X G:G H_1 [cWH][VI] 11.74 57.89; 27.6 30.29 5.09 0.39 9.3
Riboswitch 2GDI 61!X:77!X A:C rWC_Mo [---][-] 10.73 11.72; 85.03 73.31 167.81 0.53 14.74
Riboswitch 2GDI 63!X:76!X C:G WC [cWW][XIX] 10.6 54.66; 53.15 1.51 -11.22 0.53 19.94
Riboswitch 2GDI 64!X:75!X U:A WC [cWW][XX] 10.33 55.44; 59.49 4.05 -10.65 0.14 16.66
Riboswitch 2GDI 65!X:74!X G:C WC [cWW][XIX] 10.72 52.51; 51.2 1.31 -3.76 0.05 7.69
Riboswitch 2GDI 66!X:73!X G:C WC [cWW][XIX] 10.67 52.77; 54.46 1.7 -4.38 0.12 7.94
Riboswitch 2GDI 68!X:71!X U:U S(bp:N3-O2P) [---][-] 8.82 77.95; 31.68 46.26 -155.47 1.52 8.12
Riboswitch 2GDI 68!X:70!X U:A S(sb:O2*-N7) [---][-] 6.68 76.89; 41.32 35.57 -172.33 1.09 25.22
Riboswitch 2GDI 10!Y:89!Y G:C WC [cWW][XIX] 10.67 53.15; 55.03 1.88 -0.81 0.53 10.57
Riboswitch 2GDI 11!Y:88!Y G:U Wb [cWW][XXVIII] 10.46 43.59; 65.09 21.49 -11.23 0.16 13.39
Riboswitch 2GDI 12!Y:87!Y A:U WC [cWW][XX] 10.5 55.26; 56.23 0.98 -12.41 0.11 16.77
Riboswitch 2GDI 13!Y:86!Y C:G WC [cWW][XIX] 10.79 53.24; 51.36 1.88 -8.91 0.02 13.22
Riboswitch 2GDI 14!Y:85!Y U:A WC [cWW][XX] 10.25 56.94; 58.21 1.27 -4.04 0.19 8.09
Riboswitch 2GDI 15!Y:51!Y C:G WC [cWW][XIX] 10.83 53.52; 54.04 0.52 -7.06 0.22 11.22
Riboswitch 2GDI 16!Y:84!Y G:A rpS [cSS][-] 5.82 107.83; 144.07 36.24 -33.74 0.03 24.36
Riboswitch 2GDI 16!Y:50!Y G:C WC [cWW][XIX] 10.54 55.4; 57.03 1.63 -10.85 0.34 15.89
Riboswitch 2GDI 17!Y:56!Y G:A rS [tSS][-] 8.21 86.75; 58.34 28.41 179.4 0.03 26.43
Riboswitch 2GDI 17!Y:49!Y G:C WC [cWW][XIX] 10.51 54.43; 55.85 1.42 -11.45 0.69 21.42
Riboswitch 2GDI 18!Y:48!Y G:C WC [cWW][XIX] 10.94 53.36; 51.84 1.52 -15.27 0.64 25.23
Riboswitch 2GDI 19!Y:47!Y G:A WC [cWW][VIII] 12.97 44.82; 42.7 2.13 -12.92 0.26 17.04
Riboswitch 2GDI 19!Y:42!Y G:G rS [tSS][IV] 8.22 81.71; 73.99 7.72 -166.38 0.52 19.29
Riboswitch 2GDI 20!Y:45!Y U:A WC [cWW][XX] 10.01 58.26; 60.18 1.92 6.87 0.63 17.46
Riboswitch 2GDI 21!Y:71!Y G:U rpS [cSS][-] 6.67 104.43; 122.54 18.11 -38.96 1.16 33.94
Riboswitch 2GDI 21!Y:38!Y G:C WC [cWW][XIX] 10.72 51.73; 52.7 0.97 -1.99 0.57 15.8
Riboswitch 2GDI 22!Y:70!Y C:A rpS(sb:O2*-N3) [cSS][-] 5.72 135.43; 94.99 40.44 -72.99 0.12 44.84
Riboswitch 2GDI 22!Y:37!Y C:G WC [cWW][XIX] 10.43 58.63; 55.15 3.47 -9.12 0.33 20.26
Riboswitch 2GDI 23!Y:36!Y C:G WC [cWW][XIX] 10.65 55.21; 53.44 1.77 4.26 0.0 12.18
Riboswitch 2GDI 25!Y:35!Y U:A WC [cWW][XX] 10.31 55.88; 57.12 1.24 6.1 0.09 5.32
Riboswitch 2GDI 26!Y:34!Y U:A WC [cWW][XX] 10.32 58.04; 60.36 2.32 1.41 0.06 0.36
Riboswitch 2GDI 27!Y:33!Y C:G WC [cWW][XIX] 10.91 53.59; 48.93 4.66 0.02 0.68 15.15
Riboswitch 2GDI 28!Y:32!Y U:U rWb* [tWW][XII] 10.55 33.28; 23.57 9.71 86.07 1.53 38.66
Riboswitch 2GDI 37!Y:69!Y G:A fS [tSW][X] 9.86 112.57; 35.73 76.85 96.39 0.07 55.4
Riboswitch 2GDI 39!Y:43!Y U:A rH_1 [tWH][XXIV] 9.58 34.35; 17.63 16.72 -165.88 0.3 17.7
Riboswitch 2GDI 41!Y:48!Y A:C rpS(sb:O2*-N3) [cSS][-] 5.91 97.2; 146.98 49.77 -40.05 0.91 30.17
Riboswitch 2GDI 49!Y:56!Y C:A rpS(bs:O2-O2*) [cSS][-] 5.66 105.63; 155.09 49.46 -15.94 2.01 37.82
Riboswitch 2GDI 50!Y:84!Y C:A fS(sb:O2*-N1)_1 [tSS][-] 8.39 90.33; 55.65 34.68 154.06 1.74 38.3
Riboswitch 2GDI 53!Y:84!Y A:A rS* [tHH][-] 11.02 13.84; 13.11 0.74 106.81 0.16 18.37
Riboswitch 2GDI 56!Y:83!Y A:G S [tSH][XI] 9.52 2.63; 96.17 93.54 -66.2 0.48 15.78
Riboswitch 2GDI 57!Y:82!Y C:G WC [cWW][XIX] 10.58 53.97; 54.21 0.24 -9.82 0.69 20.36
Riboswitch 2GDI 58!Y:81!Y C:G WC [cWW][XIX] 10.71 54.33; 53.88 0.45 -12.91 0.45 22.74
Riboswitch 2GDI 59!Y:80!Y U:A WC [cWW][XX] 10.89 50.59; 53.28 2.7 -15.4 0.29 19.47
Riboswitch 2GDI 60!Y:78!Y G:G H_1 [cWH][VI] 11.77 58.45; 27.08 31.36 6.6 0.62 15.81
Riboswitch 2GDI 61!Y:77!Y A:C rWC_Mo [---][-] 10.97 10.26; 83.75 73.49 158.74 0.25 11.7
Riboswitch 2GDI 63!Y:76!Y C:G WC [cWW][XIX] 10.65 55.37; 54.86 0.51 -14.05 0.23 20.07
Riboswitch 2GDI 64!Y:75!Y U:A WC [cWW][XX] 10.49 53.27; 57.23 3.96 -11.51 0.17 14.16
Riboswitch 2GDI 65!Y:74!Y G:C WC [cWW][XIX] 10.6 52.87; 53.77 0.91 -5.77 0.13 9.33
Riboswitch 2GDI 66!Y:73!Y G:C WC [cWW][XIX] 10.69 54.54; 53.1 1.45 -3.68 0.12 6.57
Riboswitch 2GDI 68!Y:71!Y U:U S(bp:N3-O2P) [---][-] 8.95 77.61; 32.13 45.48 -148.89 1.22 13.84
Riboswitch 2GDI 68!Y:70!Y U:A S(sb:O2*-N7) [---][-] 6.63 77.34; 39.53 37.81 -167.84 1.05 29.34