Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2GJW BPC Identified: 32 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
dsRNA 2GJW 4!E:20!H C:G WC [cWW][XIX] 10.88 43.6; 59.5 15.9 -0.24 0.04 4.13
dsRNA 2GJW 5!E:19!H G:C WC [cWW][XIX] 11.24 43.76; 43.12 0.64 -7.18 0.23 23.71
dsRNA 2GJW 6!E:18!H A:U WC [cWW][XX] 10.36 55.92; 50.78 5.14 -8.62 0.51 5.33
dsRNA 2GJW 7!E:17!H C:G WC [cWW][XIX] 10.5 56.51; 51.27 5.24 -9.21 0.26 13.21
dsRNA 2GJW 8!E:16!H C:G WC [cWW][XIX] 10.5 56.52; 54.81 1.7 -6.2 0.03 8.13
dsRNA 2GJW 9!E:15!H G:A rS [tSS][-] 7.97 90.43; 59.2 31.23 148.3 0.74 31.97
dsRNA 2GJW 9!E:12!F G:C WC [cWW][XIX] 10.57 48.52; 55.39 6.86 -5.66 0.17 7.26
dsRNA 2GJW 10!E:11!F A:U WC [cWW][XX] 10.59 53.41; 54.63 1.22 -5.01 0.28 6.07
dsRNA 2GJW 11!E:10!F C:G WC [cWW][XIX] 10.46 56.47; 56.14 0.34 -9.65 0.02 11.56
dsRNA 2GJW 12!E:9!F C:G WC [cWW][XIX] 10.55 67.53; 53.74 13.79 -6.8 0.54 13.03
dsRNA 2GJW 15!E:9!F A:G rS [tSS][-] 8.6 47.09; 97.34 50.24 139.66 1.03 36.07
dsRNA 2GJW 16!E:8!F G:C WC [cWW][XIX] 10.52 57.33; 51.83 5.5 -5.98 0.12 19.07
dsRNA 2GJW 17!E:7!F C:G WC [cWW][XIX] 10.28 59.77; 57.86 1.91 -14.37 0.07 19.62
dsRNA 2GJW 18!E:6!F U:A WC [cWW][XX] 10.2 61.34; 63.99 2.65 -18.43 0.18 23.72
dsRNA 2GJW 20!E:5!F C:C Wb [cWW][-] 9.84 31.64; 64.92 33.28 5.73 0.49 18.66
dsRNA 2GJW 20!E:4!F C:G Wb* [---][-] 11.47 34.61; 60.84 26.23 71.13 0.3 40.21
dsRNA 2GJW 4!I:20!L C:G Wb* [---][-] 11.28 42.63; 58.92 16.28 0.06 0.07 4.21
dsRNA 2GJW 5!I:19!L G:C WC [cWW][XIX] 11.6 43.27; 41.73 1.54 -6.83 0.2 23.7
dsRNA 2GJW 6!I:18!L A:U WC [cWW][XX] 10.61 55.7; 48.42 7.28 -8.42 0.38 6.43
dsRNA 2GJW 7!I:17!L C:G WC [cWW][XIX] 10.65 57.13; 49.37 7.76 -8.77 0.29 13.42
dsRNA 2GJW 8!I:16!L C:G WC [cWW][XIX] 10.49 56.72; 53.75 2.97 -7.0 0.09 8.37
dsRNA 2GJW 9!I:15!L G:A rS [tSS][-] 8.0 91.56; 60.6 30.95 147.8 0.8 32.55
dsRNA 2GJW 9!I:12!J G:C WC [cWW][XIX] 10.63 49.59; 56.46 6.88 -6.03 0.14 6.32
dsRNA 2GJW 10!I:11!J A:U WC [cWW][XX] 10.51 53.94; 55.21 1.27 -5.97 0.17 9.68
dsRNA 2GJW 11!I:10!J C:G WC [cWW][XIX] 10.22 56.98; 57.53 0.55 -10.89 0.16 11.15
dsRNA 2GJW 12!I:9!J C:G WC_Mo [cWW][XIX] 10.4 65.51; 55.32 10.19 -8.95 0.22 13.85
dsRNA 2GJW 15!I:9!J A:G rS [tSS][-] 8.55 48.78; 99.05 50.27 137.57 1.38 39.6
dsRNA 2GJW 16!I:8!J G:C WC [cWW][XIX] 10.55 58.04; 53.32 4.72 -7.24 0.17 22.23
dsRNA 2GJW 17!I:7!J C:G WC [cWW][XIX] 10.53 59.59; 59.58 0.01 -15.08 0.16 19.99
dsRNA 2GJW 19!I:5!J G:C Wb* [---][-] 12.0 60.18; 37.12 23.06 -1.42 0.5 32.79
dsRNA 2GJW 20!I:5!J C:C Wb [cWW][-] 10.18 36.19; 60.89 24.7 2.38 0.18 13.07
dsRNA 2GJW 20!I:4!J C:G Wb* [---][-] 11.52 35.62; 56.68 21.06 63.5 0.45 38.16