Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2GPM
BPC Identified: 16
Ambiguities: 0
rRNA |
2GPM |
79!K:97!L |
C:G |
WC [cWW][XIX] |
10.7 |
53.37; 52.05 |
1.33 |
5.22 |
0.37 |
10.18 |
rRNA |
2GPM |
80!K:96!L |
U:G |
Wb [cWW][XXVIII] |
10.37 |
67.24; 41.8 |
25.44 |
12.62 |
0.77 |
23.51 |
rRNA |
2GPM |
81!K:95!L |
G:U |
Wb [cWW][XXVIII] |
10.38 |
43.85; 68.08 |
24.23 |
7.96 |
0.32 |
16.68 |
rRNA |
2GPM |
82!K:94!L |
G:C |
WC [cWW][XIX] |
10.65 |
54.32; 53.55 |
0.77 |
8.77 |
0.82 |
13.03 |
rRNA |
2GPM |
83!K:93!L |
G:C |
WC [cWW][XIX] |
10.46 |
57.14; 55.84 |
1.3 |
10.56 |
0.31 |
18.45 |
rRNA |
2GPM |
84!K:92!L |
C:G |
WC [cWW][XIX] |
10.57 |
62.66; 54.27 |
8.39 |
12.1 |
0.27 |
13.6 |
rRNA |
2GPM |
85!K:91!L |
G:C |
WC [cWW][XIX] |
10.58 |
55.29; 60.0 |
4.71 |
12.05 |
0.74 |
14.37 |
rRNA |
2GPM |
86!K:90!L |
G:C |
WC [cWW][XIX] |
10.78 |
50.75; 51.5 |
0.75 |
12.43 |
0.25 |
18.66 |
rRNA |
2GPM |
79!M:97!N |
C:G |
WC [cWW][XIX] |
10.77 |
53.99; 54.27 |
0.28 |
-1.15 |
0.22 |
4.83 |
rRNA |
2GPM |
80!M:96!N |
U:G |
Wb [cWW][XXVIII] |
10.34 |
71.16; 44.7 |
26.46 |
8.56 |
0.56 |
16.24 |
rRNA |
2GPM |
81!M:95!N |
G:U |
Wb [cWW][XXVIII] |
10.28 |
41.9; 71.03 |
29.14 |
3.1 |
0.07 |
9.78 |
rRNA |
2GPM |
82!M:94!N |
G:C |
WC [cWW][XIX] |
10.8 |
53.54; 54.06 |
0.51 |
5.79 |
0.7 |
8.76 |
rRNA |
2GPM |
83!M:93!N |
G:C |
WC [cWW][XIX] |
10.6 |
54.48; 57.06 |
2.58 |
9.95 |
0.41 |
13.78 |
rRNA |
2GPM |
84!M:92!N |
C:G |
WC [cWW][XIX] |
10.61 |
55.73; 53.83 |
1.91 |
9.46 |
0.4 |
13.2 |
rRNA |
2GPM |
85!M:91!N |
G:C |
WC [cWW][XIX] |
10.59 |
57.32; 57.36 |
0.04 |
14.39 |
0.05 |
22.48 |
rRNA |
2GPM |
86!M:90!N |
G:C |
WC [cWW][XIX] |
10.79 |
52.09; 53.06 |
0.98 |
9.57 |
0.04 |
11.35 |