Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2GQ5
BPC Identified: 16
Ambiguities: 0
| rRNA |
2GQ5 |
79!K:97!L |
C:G |
WC [cWW][XIX] |
10.77 |
53.41; 50.84 |
2.57 |
4.34 |
0.36 |
11.06 |
| rRNA |
2GQ5 |
80!K:96!L |
U:G |
Wb [cWW][XXVIII] |
10.33 |
68.39; 41.19 |
27.2 |
12.39 |
0.74 |
22.62 |
| rRNA |
2GQ5 |
81!K:95!L |
G:U |
Wb [cWW][XXVIII] |
10.39 |
43.36; 67.97 |
24.61 |
6.33 |
0.09 |
14.77 |
| rRNA |
2GQ5 |
82!K:94!L |
G:C |
WC [cWW][XIX] |
10.6 |
54.9; 53.78 |
1.12 |
9.65 |
0.95 |
11.24 |
| rRNA |
2GQ5 |
83!K:93!L |
G:C |
WC [cWW][XIX] |
10.43 |
57.03; 55.28 |
1.75 |
11.01 |
0.35 |
19.65 |
| rRNA |
2GQ5 |
84!K:92!L |
C:G |
WC [cWW][XIX] |
10.64 |
61.41; 52.97 |
8.44 |
9.78 |
0.22 |
9.91 |
| rRNA |
2GQ5 |
85!K:91!L |
G:C |
WC [cWW][XIX] |
10.5 |
57.43; 60.61 |
3.19 |
12.63 |
0.47 |
15.45 |
| rRNA |
2GQ5 |
86!K:90!L |
G:C |
WC [cWW][XIX] |
10.91 |
51.79; 51.25 |
0.54 |
10.72 |
0.25 |
18.66 |
| rRNA |
2GQ5 |
79!M:97!N |
C:G |
WC [cWW][XIX] |
10.66 |
55.71; 55.35 |
0.36 |
-1.33 |
0.11 |
6.12 |
| rRNA |
2GQ5 |
80!M:96!N |
U:G |
Wb [cWW][XXVIII] |
10.31 |
70.52; 41.5 |
29.02 |
9.34 |
0.61 |
16.22 |
| rRNA |
2GQ5 |
81!M:95!N |
G:U |
Wb [cWW][XXVIII] |
10.26 |
42.54; 70.11 |
27.57 |
3.54 |
0.07 |
11.33 |
| rRNA |
2GQ5 |
82!M:94!N |
G:C |
WC [cWW][XIX] |
10.7 |
54.91; 55.34 |
0.43 |
5.76 |
0.84 |
9.28 |
| rRNA |
2GQ5 |
83!M:93!N |
G:C |
WC [cWW][XIX] |
10.59 |
54.35; 55.63 |
1.29 |
9.16 |
0.42 |
13.63 |
| rRNA |
2GQ5 |
84!M:92!N |
C:G |
WC [cWW][XIX] |
10.57 |
56.44; 52.47 |
3.97 |
10.02 |
0.47 |
13.14 |
| rRNA |
2GQ5 |
85!M:91!N |
G:C |
WC [cWW][XIX] |
10.47 |
59.72; 57.49 |
2.24 |
14.7 |
0.16 |
21.47 |
| rRNA |
2GQ5 |
86!M:90!N |
G:C |
WC [cWW][XIX] |
10.74 |
52.15; 53.11 |
0.96 |
9.68 |
0.05 |
10.17 |