Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2H0S BPC Identified: 77 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 2H0S -2!A:2!A A:C rpS(sb:O2*-N3) [cSS][-] 6.02 82.96; 151.87 68.9 8.92 1.5 42.81
Riboswitch 2H0S -1!A:65!B A:G rS [tSS][-] 8.07 61.54; 86.78 25.24 151.69 1.23 40.98
Riboswitch 2H0S 2!A:64!B C:G WC [cWW][XIX] 10.7 55.5; 56.37 0.87 -0.79 0.11 3.63
Riboswitch 2H0S 3!A:63!B G:C WC [cWW][XIX] 10.63 52.59; 56.16 3.57 -3.85 0.1 7.41
Riboswitch 2H0S 4!A:62!B C:G WC [cWW][XIX] 10.5 57.08; 52.49 4.58 -6.16 0.02 11.1
Riboswitch 2H0S 5!A:61!B C:G WC [cWW][XIX] 10.66 56.6; 55.18 1.41 3.43 0.06 3.23
Riboswitch 2H0S 7!A:60!B G:C WC [cWW][XIX] 10.54 55.7; 57.86 2.15 1.88 0.05 8.38
Riboswitch 2H0S 7!A:34!B G:G S_1 [tSH][-] 11.6 9.34; 81.51 72.17 32.37 0.3 8.82
Riboswitch 2H0S 8!A:58!B G:A rS [tSS][-] 8.17 89.52; 60.52 29.0 130.7 1.22 55.65
Riboswitch 2H0S 8!A:33!B G:U Wb [cWW][XXVIII] 11.15 35.07; 60.68 25.62 -3.99 0.83 25.24
Riboswitch 2H0S 9!A:32!B A:U WC [cWW][XX] 10.53 52.15; 56.06 3.91 -13.03 0.66 22.95
Riboswitch 2H0S 10!A:117!B C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.72 109.95; 146.02 36.07 -39.55 1.62 2.53
Riboswitch 2H0S 10!A:31!B C:G WC [cWW][XIX] 10.37 56.59; 55.5 1.09 -12.54 0.16 18.61
Riboswitch 2H0S 11!A:116!B U:G rpS [cSS][-] 5.47 150.33; 102.34 47.99 -55.65 0.56 28.55
Riboswitch 2H0S 11!A:30!B U:A WC [cWW][XX] 10.57 55.3; 55.61 0.31 -10.39 0.17 12.25
Riboswitch 2H0S 12!A:115!B U:C fS(sb:O2*-N3) [---][-] 7.56 165.84; 42.34 123.5 157.27 0.68 34.77
Riboswitch 2H0S 12!A:29!B U:A WC [cWW][XX] 10.42 60.19; 55.31 4.87 -12.36 0.03 14.75
Riboswitch 2H0S 13!A:28!B A:U WC [cWW][XX] 10.4 54.77; 56.17 1.4 -10.57 0.05 17.08
Riboswitch 2H0S 14!A:27!B A:U WC [cWW][XX] 10.38 56.14; 56.93 0.79 -9.67 0.05 12.57
Riboswitch 2H0S 15!A:26!B A:U WC [cWW][XX] 10.47 56.1; 54.25 1.85 -7.5 0.11 9.8
Riboswitch 2H0S 16!A:25!B G:C WC [cWW][XIX] 10.47 57.11; 56.5 0.62 -8.6 0.01 11.24
Riboswitch 2H0S 17!A:24!B C:G WC [cWW][XIX] 10.63 60.37; 53.11 7.26 -10.37 0.09 15.91
Riboswitch 2H0S 18!A:23!B C:G WC [cWW][XIX] 10.68 55.72; 55.9 0.18 0.39 0.03 1.12
Riboswitch 2H0S 31!B:117!B G:A rS [tSS][-] 8.41 88.94; 58.68 30.25 159.79 0.83 20.99
Riboswitch 2H0S 35!B:36!B A:C pS* [cHS][-] 6.83 143.07; 40.63 102.44 32.64 0.28 31.54
Riboswitch 2H0S 36!B:105!B C:A rpS(sb:O2*-N3) [cSS][-] 5.52 133.56; 92.78 40.79 -83.27 0.7 57.54
Riboswitch 2H0S 36!B:53!B C:G WC [cWW][XIX] 10.51 55.76; 53.01 2.75 -1.5 0.23 10.72
Riboswitch 2H0S 37!B:127!B G:A fS [tSW][X] 10.23 98.4; 47.06 51.33 110.49 1.15 61.77
Riboswitch 2H0S 37!B:104!B G:A rpS(sb:O2*-N3) [---][-] 5.69 140.14; 87.1 53.05 -67.72 1.72 58.53
Riboswitch 2H0S 37!B:52!B G:C WC [cWW][XIX] 10.56 51.07; 56.02 4.95 -8.74 0.19 8.03
Riboswitch 2H0S 38!B:51!B A:U WC [cWW][XX] 10.28 57.23; 58.07 0.84 -11.51 0.01 10.88
Riboswitch 2H0S 42!B:73!B C:G WC [cWW][XIX] 10.81 54.12; 53.35 0.76 -8.02 0.03 11.46
Riboswitch 2H0S 43!B:72!B A:U WC [cWW][XX] 10.29 59.32; 55.53 3.8 -5.91 0.17 11.08
Riboswitch 2H0S 44!B:71!B G:C WC [cWW][XIX] 10.56 54.65; 53.46 1.18 -6.24 0.09 13.73
Riboswitch 2H0S 45!B:70!B G:C WC [cWW][XIX] 10.79 56.17; 52.89 3.27 -6.51 0.08 14.65
Riboswitch 2H0S 46!B:69!B G:C WC [cWW][XIX] 10.7 55.68; 51.87 3.81 -13.74 0.7 24.71
Riboswitch 2H0S 47!B:68!B U:G Wb [cWW][XXVIII] 10.84 62.56; 35.66 26.9 -7.91 0.25 15.81
Riboswitch 2H0S 48!B:50!B U:A H_1 [cWH][XXIII] 7.93 66.89; 52.04 14.84 4.47 0.14 11.64
Riboswitch 2H0S 52!B:128!B C:G rpS [cSS][-] 5.7 130.72; 98.24 32.47 -91.6 0.44 55.66
Riboswitch 2H0S 53!B:127!B G:A rpS(sb:O2*-N3) [---][-] 5.87 141.86; 87.49 54.37 -74.55 1.58 63.19
Riboswitch 2H0S 53!B:104!B G:A fS [tSW][X] 10.25 100.26; 42.53 57.72 114.26 1.18 59.72
Riboswitch 2H0S 54!B:106!B A:A rS(sb:O2*-N1)_1 [tSS][-] 7.87 93.91; 53.08 40.83 169.82 0.52 40.49
Riboswitch 2H0S 54!B:59!B A:U rWC [tWW][XXI] 11.18 29.39; 40.39 10.99 -159.94 0.34 10.05
Riboswitch 2H0S 74!B:90!B C:G WC [cWW][XIX] 10.85 52.25; 55.37 3.11 -8.95 0.07 13.72
Riboswitch 2H0S 75!B:93!B G:A rS [tSS][-] 8.26 85.72; 57.03 28.68 147.19 1.48 47.44
Riboswitch 2H0S 75!B:89!B G:C WC [cWW][XIX] 10.68 53.68; 54.45 0.77 -18.02 0.37 27.33
Riboswitch 2H0S 76!B:88!B G:C WC [cWW][XIX] 10.65 53.41; 53.67 0.26 -7.48 0.07 10.93
Riboswitch 2H0S 77!B:87!B U:A WC [cWW][XX] 10.75 50.31; 54.52 4.21 -12.9 0.22 13.54
Riboswitch 2H0S 78!B:86!B C:G WC [cWW][XIX] 10.51 59.11; 48.12 10.99 -7.91 0.22 12.28
Riboswitch 2H0S 79!B:81!B U:C H_2 [---][-] 9.09 90.54; 30.38 60.16 -41.39 2.3 50.75
Riboswitch 2H0S 80!B:144!B U:A WC [cWW][XX] 10.72 55.79; 52.25 3.54 -18.42 0.35 20.38
Riboswitch 2H0S 81!B:143!B C:G WC [cWW][XIX] 10.76 56.38; 54.76 1.62 -10.48 0.34 15.83
Riboswitch 2H0S 82!B:142!B C:G WC [cWW][XIX] 10.45 55.81; 55.75 0.06 -10.38 0.06 12.8
Riboswitch 2H0S 83!B:141!B U:A WC [cWW][XX] 10.43 50.62; 57.29 6.67 -10.52 0.01 15.65
Riboswitch 2H0S 84!B:140!B G:C WC [cWW][XIX] 10.65 54.53; 53.46 1.07 -4.55 0.01 9.42
Riboswitch 2H0S 85!B:139!B C:G WC [cWW][XIX] 10.27 59.6; 58.23 1.37 -5.83 0.21 14.89
Riboswitch 2H0S 89!B:93!B C:A rpS(bs:O2-O2*) [cSS][-] 5.8 104.36; 146.75 42.39 -41.01 1.47 21.24
Riboswitch 2H0S 90!B:91!B G:U pS* [cHS][-] 6.06 135.58; 55.46 80.12 49.73 0.55 37.06
Riboswitch 2H0S 95!B:137!B A:G S [tSH][XI] 9.77 9.74; 97.19 87.46 -5.85 0.18 11.85
Riboswitch 2H0S 96!B:136!B G:C WC [cWW][XIX] 10.63 56.78; 62.14 5.37 -7.69 0.11 8.67
Riboswitch 2H0S 97!B:135!B G:C WC [cWW][XIX] 10.72 51.3; 56.09 4.79 1.25 0.37 8.17
Riboswitch 2H0S 98!B:134!B A:U WC [cWW][XX] 11.06 55.12; 57.64 2.51 -5.58 0.15 9.54
Riboswitch 2H0S 99!B:133!B C:G WC [cWW][XIX] 10.45 53.46; 54.4 0.95 -15.34 0.06 19.69
Riboswitch 2H0S 100!B:132!B U:A WC [cWW][XX] 10.51 57.17; 57.13 0.05 -13.28 0.09 17.18
Riboswitch 2H0S 101!B:131!B G:C WC [cWW][XIX] 10.82 58.92; 51.36 7.56 -17.68 0.23 19.62
Riboswitch 2H0S 102!B:129!B G:A S [tSH][XI] 10.79 76.76; 23.69 53.07 -177.44 0.49 11.5
Riboswitch 2H0S 105!B:126!B A:U rH_1 [tWH][XXIV] 10.03 15.46; 35.11 19.66 172.61 0.02 5.49
Riboswitch 2H0S 106!B:125!B A:A rH [tWH][V] 12.2 20.2; 23.48 3.28 127.41 0.08 18.32
Riboswitch 2H0S 107!B:124!B* A:C sWb [---][-]; rH_2_Mo [---][-] 10.82 6.12; 65.84 59.72 49.35 0.79 35.37
Riboswitch 2H0S 108!B:123!B C:G WC [cWW][XIX] 10.64 52.34; 55.46 3.12 -11.3 0.11 19.62
Riboswitch 2H0S 109!B:122!B C:G WC [cWW][XIX] 10.76 55.41; 53.34 2.07 -9.58 0.15 12.21
Riboswitch 2H0S 110!B:121!B A:U WC [cWW][XX] 10.49 56.43; 55.72 0.71 -13.21 0.17 12.97
Riboswitch 2H0S 111!B:120!B C:G WC [cWW][XIX] 10.59 54.06; 51.99 2.07 -9.28 0.15 17.22
Riboswitch 2H0S 112!B:119!B A:U WC [cWW][XX] 10.44 58.15; 56.09 2.06 -5.86 0.02 11.73
Riboswitch 2H0S 113!B:118!B G:C WC [cWW][XIX] 10.54 55.28; 56.47 1.19 3.8 0.23 3.94
Riboswitch 2H0S 114!B:117!B G:A S_mo [tSH][XI] 10.03 84.39; 20.38 64.01 -149.54 0.64 22.21
Riboswitch 2H0S 114!B:116!B G:G S(sb:O2*-N7)_1 [---][-] 7.49 81.0; 33.84 47.16 -177.51 2.52 25.74