Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2H1M
BPC Identified: 16
Ambiguities: 0
| dsRNA |
2H1M |
1!A:32!B |
G:C |
WC [cWW][XIX] |
10.89 |
49.3; 54.86 |
5.55 |
-0.03 |
0.04 |
5.56 |
| dsRNA |
2H1M |
2!A:31!B |
C:G |
WC [cWW][XIX] |
10.53 |
55.07; 55.21 |
0.14 |
-9.19 |
0.02 |
12.68 |
| dsRNA |
2H1M |
3!A:30!B |
A:U |
WC [cWW][XX] |
10.54 |
58.18; 56.32 |
1.87 |
-4.95 |
0.06 |
7.76 |
| dsRNA |
2H1M |
4!A:29!B |
G:C |
WC [cWW][XIX] |
10.66 |
54.64; 59.12 |
4.48 |
-13.5 |
0.19 |
20.53 |
| dsRNA |
2H1M |
5!A:28!B |
A:U |
WC [cWW][XX] |
10.93 |
54.07; 52.33 |
1.74 |
-6.87 |
0.04 |
14.13 |
| dsRNA |
2H1M |
6!A:27!B |
G:A |
H*_1 [cHW][-] |
11.57 |
26.99; 57.7 |
30.71 |
-3.61 |
0.22 |
14.96 |
| dsRNA |
2H1M |
7!A:26!B |
U:A |
WC [cWW][XX] |
10.55 |
51.26; 57.2 |
5.94 |
-15.6 |
0.01 |
20.18 |
| dsRNA |
2H1M |
8!A:25!B |
U:A |
WC [cWW][XX] |
10.16 |
58.45; 61.25 |
2.81 |
-14.47 |
0.4 |
15.67 |
| dsRNA |
2H1M |
9!A:24!B |
A:U |
WC [cWW][XX] |
10.46 |
53.57; 60.16 |
6.58 |
-12.38 |
0.4 |
13.01 |
| dsRNA |
2H1M |
10!A:23!B |
A:U |
WC [cWW][XX] |
10.68 |
54.88; 52.94 |
1.94 |
-14.14 |
0.04 |
19.61 |
| dsRNA |
2H1M |
11!A:22!B |
A:G |
H*_1 [cHW][-] |
11.68 |
66.83; 24.17 |
42.66 |
-2.46 |
0.04 |
20.09 |
| dsRNA |
2H1M |
12!A:21!B |
U:A |
WC [cWW][XX] |
10.63 |
53.54; 54.58 |
1.04 |
-6.12 |
0.09 |
12.23 |
| dsRNA |
2H1M |
13!A:20!B |
C:G |
WC [cWW][XIX] |
10.73 |
53.78; 53.69 |
0.08 |
-10.89 |
0.21 |
18.77 |
| dsRNA |
2H1M |
14!A:19!B |
U:A |
WC [cWW][XX] |
10.47 |
57.63; 57.82 |
0.19 |
-3.36 |
0.13 |
6.0 |
| dsRNA |
2H1M |
15!A:18!B |
G:C |
WC [cWW][XIX] |
10.57 |
52.76; 55.58 |
2.82 |
-10.5 |
0.06 |
13.95 |
| dsRNA |
2H1M |
16!A:17!B |
C:G |
WC [cWW][XIX] |
10.84 |
57.28; 46.1 |
11.19 |
-1.78 |
0.23 |
10.93 |