Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2HOM BPC Identified: 41 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 2HOM 9!A:90!A G:C WC [cWW][XIX] 10.62 54.81; 54.84 0.02 -17.2 0.02 16.58
Riboswitch 2HOM 10!A:89!A C:G WC [cWW][XIX] 10.58 51.64; 57.08 5.44 -12.91 0.14 14.9
Riboswitch 2HOM 11!A:88!A G:C WC [cWW][XIX] 10.6 56.84; 55.57 1.27 -11.65 0.24 15.79
Riboswitch 2HOM 12!A:87!A A:U WC [cWW][XX] 10.45 57.4; 53.89 3.5 -13.69 0.02 17.67
Riboswitch 2HOM 13!A:86!A C:G WC [cWW][XIX] 10.83 53.15; 50.58 2.58 -15.99 0.19 22.23
Riboswitch 2HOM 14!A:85!A* U:A WC [cWW][XX]; Wb* [---][-] 10.64 49.94; 62.68 12.74 -3.61 0.11 13.05
Riboswitch 2HOM 15!A:51!A C:G WC [cWW][XIX] 10.58 54.01; 57.15 3.14 -9.88 0.06 13.18
Riboswitch 2HOM 16!A:84!A G:A rpS [cSS][-] 6.02 110.27; 148.58 38.3 -30.08 0.2 14.9
Riboswitch 2HOM 16!A:50!A G:C WC [cWW][XIX] 10.49 57.92; 54.87 3.05 -13.46 0.12 15.21
Riboswitch 2HOM 17!A:56!A G:A rS [tSS][-] 8.05 85.58; 58.59 26.99 174.0 0.11 21.11
Riboswitch 2HOM 17!A:49!A G:C WC [cWW][XIX] 10.44 54.12; 57.7 3.58 -10.21 0.08 12.8
Riboswitch 2HOM 18!A:57!A G:C rS(ss:O2*-O2*) [---][-] 5.01 166.46; 143.11 23.35 -77.94 2.09 39.43
Riboswitch 2HOM 18!A:48!A G:C WC [cWW][XIX] 10.76 52.8; 53.42 0.62 -19.25 0.59 26.3
Riboswitch 2HOM 19!A:47!A G:A WC [cWW][VIII] 12.86 44.16; 45.98 1.83 -9.58 0.28 9.75
Riboswitch 2HOM 19!A:42!A G:G rS [tSS][IV] 8.26 78.87; 77.64 1.23 -163.48 0.36 22.47
Riboswitch 2HOM 20!A:45!A U:A WC [cWW][XX] 10.17 61.61; 54.16 7.45 15.75 0.91 29.11
Riboswitch 2HOM 21!A:71!A G:U rpS [cSS][-] 7.08 102.15; 125.44 23.29 -45.53 0.55 34.4
Riboswitch 2HOM 21!A:38!A G:C WC [cWW][XIX] 10.86 50.21; 53.19 2.98 -2.95 0.02 16.34
Riboswitch 2HOM 22!A:70!A C:A rpS(sb:O2*-N3) [cSS][-] 5.53 131.42; 94.46 36.96 -78.44 0.84 55.95
Riboswitch 2HOM 22!A:37!A C:G WC [cWW][XIX] 10.71 55.4; 53.89 1.51 -7.85 0.16 8.92
Riboswitch 2HOM 23!A:36!A C:G WC [cWW][XIX] 10.61 56.97; 51.25 5.72 -7.15 0.04 7.81
Riboswitch 2HOM 24!A:35!A C:A sWb [---][-] 10.9 75.83; 31.27 44.57 -0.69 0.26 4.98
Riboswitch 2HOM 25!A:36!A U:G S*_1 [tHS][-] 11.34 17.79; 98.24 80.45 55.91 0.09 59.9
Riboswitch 2HOM 37!A:69!A G:A fS [tSW][X] 10.31 110.31; 39.02 71.29 87.3 0.52 64.8
Riboswitch 2HOM 39!A:43!A U:A rH_1 [tWH][XXIV] 9.79 35.56; 14.89 20.67 -157.12 0.09 16.63
Riboswitch 2HOM 41!A:48!A A:C rpS(sb:O2*-N3) [cSS][-] 5.55 102.25; 150.22 47.97 -45.02 0.3 23.63
Riboswitch 2HOM 49!A:56!A C:A rpS(bs:O2-O2*) [cSS][-] 5.52 106.83; 157.08 50.24 -18.6 0.96 22.93
Riboswitch 2HOM 50!A:84!A C:A fS(sb:O2*-N1)_1 [tSS][-] 8.34 89.59; 59.42 30.17 158.65 1.61 29.37
Riboswitch 2HOM 53!A:84!A A:A rS* [tHH][-] 10.36 25.27; 13.12 12.14 84.66 0.39 27.14
Riboswitch 2HOM 56!A:83!A A:G S [tSH][XI] 9.42 4.55; 93.76 89.21 -86.71 0.52 21.2
Riboswitch 2HOM 57!A:82!A C:G WC [cWW][XIX] 10.65 59.47; 47.65 11.81 -9.73 0.31 22.8
Riboswitch 2HOM 58!A:81!A C:G WC [cWW][XIX] 10.45 54.64; 47.21 7.44 -9.68 0.17 13.83
Riboswitch 2HOM 59!A:80!A U:A WC [cWW][XX] 10.48 57.57; 53.93 3.64 -13.48 1.19 28.47
Riboswitch 2HOM 60!A:78!A G:G H_1 [cWH][VI] 11.31 60.69; 26.08 34.61 6.13 0.03 5.21
Riboswitch 2HOM 61!A:77!A A:C fS [tSW][-] 10.31 17.44; 88.41 70.97 163.41 0.15 8.12
Riboswitch 2HOM 63!A:76!A C:G WC [cWW][XIX] 10.42 56.25; 54.84 1.42 -16.76 0.7 26.79
Riboswitch 2HOM 64!A:75!A U:A WC [cWW][XX] 10.61 55.86; 56.79 0.93 -7.65 0.48 18.52
Riboswitch 2HOM 65!A:74!A G:C WC [cWW][XIX] 10.79 55.23; 52.83 2.4 5.12 0.27 2.64
Riboswitch 2HOM 66!A:73!A G:C WC [cWW][XIX] 10.32 54.3; 57.97 3.67 -5.2 0.03 7.1
Riboswitch 2HOM 68!A:71!A U:U S(bp:N3-O2P) [---][-] 8.53 77.49; 28.14 49.35 -155.31 1.8 4.22
Riboswitch 2HOM 68!A:70!A U:A S(sb:O2*-N7) [---][-] 6.67 76.41; 41.51 34.89 -171.72 1.21 27.24