Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2HOO BPC Identified: 39 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 2HOO 9!A:90!A G:C WC [cWW][XIX] 10.79 53.89; 51.22 2.67 -17.29 0.06 13.2
Riboswitch 2HOO 10!A:89!A C:G WC [cWW][XIX] 10.54 57.86; 56.7 1.16 -11.33 0.46 4.6
Riboswitch 2HOO 11!A:88!A G:C WC [cWW][XIX] 10.52 58.12; 53.49 4.64 -8.46 0.14 10.47
Riboswitch 2HOO 12!A:87!A A:U WC [cWW][XX] 10.47 53.99; 57.75 3.76 -12.85 0.37 17.29
Riboswitch 2HOO 13!A:86!A C:G WC_Mo [cWW][XIX] 10.72 60.87; 56.86 4.01 -12.69 0.34 14.94
Riboswitch 2HOO 14!A:85!A U:A WC [cWW][XX] 10.5 57.96; 62.57 4.62 -7.64 0.07 17.18
Riboswitch 2HOO 15!A:51!A C:G WC [cWW][XIX] 10.35 56.3; 58.36 2.07 -9.32 0.02 13.11
Riboswitch 2HOO 16!A:84!A G:A rpS [cSS][-] 6.03 110.83; 142.4 31.57 -17.05 0.4 13.5
Riboswitch 2HOO 16!A:50!A G:C WC [cWW][XIX] 10.32 56.25; 56.83 0.58 -12.48 0.11 16.08
Riboswitch 2HOO 17!A:56!A G:A rS [tSS][-] 8.41 89.54; 58.78 30.76 176.52 0.32 22.79
Riboswitch 2HOO 17!A:49!A G:C WC [cWW][XIX] 10.43 57.59; 55.45 2.14 -17.65 0.37 21.77
Riboswitch 2HOO 18!A:48!A G:C WC [cWW][XIX] 10.72 52.89; 55.33 2.45 -16.38 0.31 12.39
Riboswitch 2HOO 19!A:47!A G:A WC [cWW][VIII] 13.08 45.19; 39.72 5.48 -6.78 0.21 9.44
Riboswitch 2HOO 19!A:42!A G:G rS [tSS][IV] 8.35 78.27; 71.88 6.39 -162.29 0.2 22.16
Riboswitch 2HOO 20!A:45!A U:A WC [cWW][XX] 9.55 63.61; 65.22 1.61 9.73 0.44 20.55
Riboswitch 2HOO 21!A:71!A G:U rpS [cSS][-] 6.99 94.55; 130.38 35.84 -48.76 0.59 26.47
Riboswitch 2HOO 21!A:38!A G:C WC [cWW][XIX] 11.0 44.56; 54.93 10.36 -12.36 0.09 26.34
Riboswitch 2HOO 22!A:70!A C:A rpS(sb:O2*-N3) [cSS][-] 5.32 138.29; 88.19 50.11 -87.22 0.29 56.8
Riboswitch 2HOO 22!A:37!A C:G WC [cWW][XIX] 10.63 57.87; 54.55 3.32 -6.4 0.12 9.58
Riboswitch 2HOO 23!A:36!A C:G WC [cWW][XIX] 10.6 56.7; 49.73 6.97 -6.29 0.12 15.03
Riboswitch 2HOO 24!A:35!A C:A Wb [cWW][-] 10.6 71.3; 34.67 36.64 -2.77 0.0 8.35
Riboswitch 2HOO 25!A:36!A U:G S*_1 [tHS][-] 11.26 15.54; 93.86 78.32 84.62 0.28 51.5
Riboswitch 2HOO 37!A:69!A G:A fS [tSW][X] 10.57 107.65; 36.04 71.61 93.4 0.08 55.43
Riboswitch 2HOO 39!A:43!A U:A rH_1 [tWH][XXIV] 9.96 27.63; 13.26 14.37 -179.06 0.13 8.61
Riboswitch 2HOO 41!A:48!A A:C rpS(sb:O2*-N3) [cSS][-] 5.7 102.79; 149.77 46.99 -54.01 0.64 19.71
Riboswitch 2HOO 49!A:56!A C:A rpS(bs:O2-O2*) [cSS][-] 5.55 107.91; 153.21 45.3 -11.44 2.37 38.32
Riboswitch 2HOO 50!A:84!A C:A fS(sb:O2*-N1)_1 [tSS][-] 8.42 92.14; 54.21 37.92 160.44 1.65 29.04
Riboswitch 2HOO 53!A:84!A A:A rS* [tHH][-] 10.77 23.74; 17.75 5.99 81.75 0.59 28.76
Riboswitch 2HOO 56!A:83!A A:G S [tSH][XI] 9.6 3.49; 95.58 92.08 -13.46 0.68 15.37
Riboswitch 2HOO 57!A:82!A C:G WC [cWW][XIX] 10.55 52.81; 55.81 3.0 -13.0 0.65 20.63
Riboswitch 2HOO 58!A:81!A C:G WC [cWW][XIX] 10.54 50.55; 55.33 4.78 -4.79 0.03 10.54
Riboswitch 2HOO 59!A:80!A U:A WC [cWW][XX] 10.6 60.47; 49.59 10.88 -5.69 0.56 7.5
Riboswitch 2HOO 60!A:78!A G:G H_1 [cWH][VI] 11.64 61.1; 29.19 31.91 14.15 0.97 22.34
Riboswitch 2HOO 61!A:77!A A:C rWC_Mo [---][-] 10.14 17.03; 83.28 66.25 148.37 0.3 11.95
Riboswitch 2HOO 63!A:76!A C:G Wb* [---][-] 10.75 43.75; 66.59 22.84 7.24 1.34 30.63
Riboswitch 2HOO 64!A:75!A U:A WC [cWW][XX] 10.87 58.01; 54.39 3.62 -12.72 0.16 20.56
Riboswitch 2HOO 65!A:74!A G:C WC [cWW][XIX] 10.47 53.78; 56.13 2.35 -2.03 0.97 6.0
Riboswitch 2HOO 66!A:73!A G:C WC [cWW][XIX] 10.49 59.17; 52.28 6.88 6.53 0.44 14.03
Riboswitch 2HOO 68!A:70!A U:A S(sb:O2*-N7) [---][-] 6.56 76.76; 37.88 38.87 -164.77 1.19 29.03