Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2IL9 BPC Identified: 77 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
IRES_RNA 2IL9 6008!A:6070!A U:G WC [---][-] 10.46 55.71; 65.74 10.03 -1.73 0.46 20.35
IRES_RNA 2IL9 6009!A:6069!A A:A WC [---][-] 11.44 65.78; 61.51 4.27 -5.29 1.06 15.75
IRES_RNA 2IL9 6016!A:6063!A C:U rH* [---][-] 12.88 29.98; 15.75 14.24 1.02 0.01 28.44
IRES_RNA 2IL9 6019!A:6060!A A:U Wb [---][-] 10.56 45.97; 76.43 30.46 -12.62 0.26 10.4
IRES_RNA 2IL9 6023!A:6056!A A:U WC [cWW][XX] 10.41 56.58; 63.78 7.19 -3.17 0.0 1.94
IRES_RNA 2IL9 6024!A:6055!A A:U WC [cWW][XX] 10.58 61.06; 62.38 1.32 2.83 0.63 13.89
IRES_RNA 2IL9 6025!A:6054!A A:U Wb [---][-] 10.54 49.27; 66.29 17.02 -2.18 0.16 18.29
IRES_RNA 2IL9 6026!A:6053!A U:G Wb [cWW][XXVIII] 10.07 70.94; 45.2 25.74 -0.51 0.01 6.49
IRES_RNA 2IL9 6029!A:6050!A G:A S_mo [tSH][XI] 9.7 88.93; 18.06 70.87 -139.75 0.24 14.83
IRES_RNA 2IL9 6029!A:6049!A G:A S(sb:O2*-N7) [---][-] 7.29 79.39; 40.78 38.61 -173.61 2.13 26.18
IRES_RNA 2IL9 6030!A:6031!A G:U pS* [cHS][-] 6.53 134.5; 59.35 75.16 -41.92 1.57 21.93
IRES_RNA 2IL9 6040!A:6145!M G:C WC [cWW][XIX] 11.06 58.22; 47.42 10.8 -8.69 0.75 22.13
IRES_RNA 2IL9 6042!A:6143!M G:C Wb* [---][-] 11.32 70.29; 42.15 28.13 -5.94 0.43 20.32
IRES_RNA 2IL9 6044!A:6141!M U:C WC_mo [cWW][XVIII] 11.8 33.33; 39.12 5.79 -8.96 0.63 15.69
IRES_RNA 2IL9 6045!A:6140!M U:A rH_4 [---][-] 13.55 21.65; 16.88 4.77 9.76 0.21 7.66
IRES_RNA 2IL9 6049!A:6134!M A:U rpS(sb:O2*-N3) [cSS][-] 5.41 94.5; 155.57 61.07 -51.93 0.83 32.72
IRES_RNA 2IL9 6050!A:6133!M A:C rpS(bs:O2-O2*) [cSS][-] 6.11 155.86; 102.6 53.27 -51.27 1.05 8.86
IRES_RNA 2IL9 6050!A:6107!M A:G rS [tSS][-] 8.13 63.7; 83.86 20.15 167.94 0.18 10.62
IRES_RNA 2IL9 6078!A:6114!A G:C WC [cWW][XIX] 10.73 45.02; 48.68 3.66 -22.53 0.44 18.5
IRES_RNA 2IL9 6079!A:6113!A G:C WC [cWW][XIX] 10.27 46.09; 61.52 15.43 -11.08 0.07 13.91
IRES_RNA 2IL9 6082!A:6110!A U:G Wb [cWW][XXVIII] 10.57 65.57; 40.72 24.85 -5.4 1.16 33.16
IRES_RNA 2IL9 6083!A:6096!A* U:U Wb [cWW][XVI]; sWb [---][-] 9.26 36.15; 81.21 45.06 -3.33 0.42 9.73
IRES_RNA 2IL9 6084B!A:6084E!A G:A S [tSH][XI] 10.08 79.99; 16.28 63.71 -153.07 0.06 10.17
IRES_RNA 2IL9 6097!A:6135!A U:A Wb*_PSU [---][-] 11.22 41.13; 39.09 2.04 179.58 1.0 24.62
IRES_RNA 2IL9 6098!A:6105!A A:A rH [tWH][V] 11.9 25.25; 24.06 1.2 -82.88 0.73 36.52
IRES_RNA 2IL9 6101!A:6139!A A:U Wb [---][-] 10.6 54.07; 66.27 12.2 -23.29 0.24 27.67
IRES_RNA 2IL9 6102!A:6138!A C:G Wb* [---][-] 10.58 46.65; 67.44 20.79 -19.77 0.26 24.94
IRES_RNA 2IL9 6103!A:6137!A A:U Wb [---][-] 9.8 51.88; 76.31 24.42 -16.99 1.19 13.88
IRES_RNA 2IL9 6104!A:6032!M C:U pfS*_1 [cWS][-] 7.41 115.03; 62.51 52.52 -11.04 0.69 27.23
IRES_RNA 2IL9 6104!A:6136!A C:G Wb* [---][-] 10.81 47.01; 66.54 19.53 -19.68 1.36 10.9
IRES_RNA 2IL9 6105!A:6031!M A:U pS* [cHS][-] 7.19 136.7; 29.25 107.45 4.56 1.24 88.08
IRES_RNA 2IL9 6106!A:6134!A A:U WC [cWW][XX] 10.26 61.81; 56.56 5.25 -8.72 0.78 11.2
IRES_RNA 2IL9 6107!A:6050!M G:A rS [tSS][-] 8.28 98.51; 62.07 36.44 160.76 0.75 21.36
IRES_RNA 2IL9 6107!A:6133!A G:C Wb* [---][-] 11.02 66.94; 45.81 21.13 -5.88 0.3 18.71
IRES_RNA 2IL9 6108!A:6132!A A:U WC [cWW][XX] 10.38 66.09; 55.53 10.57 -11.92 0.46 24.15
IRES_RNA 2IL9 6116!A:6126!A G:C Wb* [---][-] 11.4 77.68; 48.41 29.28 -0.76 0.23 19.19
IRES_RNA 2IL9 6118!A:6124!A G:C WC [cWW][XIX] 11.31 57.33; 53.68 3.65 0.76 0.48 8.94
IRES_RNA 2IL9 6133!A:6050!M C:A rpS(bs:O2-O2*) [cSS][-] 5.88 93.03; 154.24 61.2 -51.11 1.3 7.54
IRES_RNA 2IL9 6134!A:6049!M U:A rpS(sb:O2*-N3) [cSS][-] 5.53 159.0; 95.37 63.62 -52.49 1.04 45.06
IRES_RNA 2IL9 6136!A:6032!M G:U fS*_2 [---][-] 10.58 104.7; 14.29 90.42 29.24 0.87 20.98
IRES_RNA 2IL9 6141!A:6044!M C:U WC_mo [cWW][XVIII] 12.17 28.29; 32.3 4.01 -6.09 0.81 25.46
IRES_RNA 2IL9 6142!A:6043!M C:G Wb* [---][-] 11.13 38.05; 68.98 30.92 0.29 0.46 17.88
IRES_RNA 2IL9 6143!A:6042!M C:G WC [cWW][XIX] 11.27 56.23; 50.37 5.86 -2.87 0.38 24.62
IRES_RNA 2IL9 6145!A:6040!M C:G WC [cWW][XIX] 10.91 54.76; 49.46 5.3 -13.61 0.07 16.37
IRES_RNA 2IL9 6146!A:6039!M G:C Wb* [---][-] 12.38 50.58; 26.03 24.55 -13.32 0.39 29.85
IRES_RNA 2IL9 6014!M:6065!M A:C Wb_mo [cWW][-] 12.11 18.33; 54.67 36.34 3.33 0.19 16.17
IRES_RNA 2IL9 6015!M:6064!M U:G sWb* [---][-] 12.17 25.17; 69.26 44.1 35.28 2.07 43.35
IRES_RNA 2IL9 6017!M:6062!M U:U Wb_mo [cWW][XVI] 10.05 33.87; 52.66 18.8 -15.77 0.34 33.0
IRES_RNA 2IL9 6018!M:6061!M U:A WC [cWW][XX] 10.2 54.48; 66.37 11.89 -12.46 0.36 18.06
IRES_RNA 2IL9 6019!M:6060!M A:U Wb* [---][-] 10.36 68.73; 46.81 21.92 -2.65 0.54 12.95
IRES_RNA 2IL9 6021!M:6058!M U:A WC [cWW][XX] 10.49 55.04; 44.86 10.19 4.59 1.21 8.51
IRES_RNA 2IL9 6024!M:6055!M A:U Wb* [---][-] 10.72 65.7; 52.57 13.14 -0.81 0.17 16.79
IRES_RNA 2IL9 6025!M:6054!M A:U Wb* [---][-] 10.26 69.86; 41.27 28.59 -3.98 0.2 17.95
IRES_RNA 2IL9 6026!M:6053!M U:G Wb [cWW][XXVIII] 9.96 67.98; 46.92 21.06 -3.07 0.25 12.94
IRES_RNA 2IL9 6027!M:6052!M U:A Wb* [---][-] 10.17 46.2; 62.67 16.47 -0.03 1.16 9.69
IRES_RNA 2IL9 6028!M:6051!M A:U WC [cWW][XX] 10.65 46.93; 58.84 11.91 -3.99 0.01 16.62
IRES_RNA 2IL9 6029!M:6050!M G:A S_mo [tSH][XI] 9.91 84.04; 17.8 66.24 -133.3 0.78 13.39
IRES_RNA 2IL9 6029!M:6049!M G:A S(sb:O2*-N7) [---][-] 7.44 74.8; 35.31 39.49 -172.61 2.36 22.06
IRES_RNA 2IL9 6079!M:6113!M G:C WC [cWW][XIX] 10.42 42.6; 52.51 9.91 -16.4 0.01 15.43
IRES_RNA 2IL9 6080!M:6112!M U:A WC [cWW][XX] 10.89 43.03; 54.31 11.28 -8.32 0.2 13.88
IRES_RNA 2IL9 6081!M:6111!M C:G Wb [---][-] 10.13 62.93; 46.6 16.33 -4.92 0.55 14.1
IRES_RNA 2IL9 6082!M:6110!M U:G Wb [cWW][XXVIII] 10.49 66.13; 40.22 25.91 -2.2 0.6 20.51
IRES_RNA 2IL9 6083!M:6096!M U:U Wb [cWW][XVI] 8.87 42.18; 76.19 34.01 -11.17 1.04 28.37
IRES_RNA 2IL9 6084!M:6095!M G:C Wb* [---][-] 11.15 74.06; 41.36 32.7 -2.34 0.07 11.43
IRES_RNA 2IL9 6084B!M:6084E!M G:A S_mo [tSH][XI] 10.05 81.23; 20.31 60.92 -139.52 1.3 7.37
IRES_RNA 2IL9 6097!M:6135!M U:A rWC [tWW][XXI] 10.91 38.0; 40.76 2.76 -160.54 1.03 26.33
IRES_RNA 2IL9 6101!M:6139!M A:U Wb* [---][-] 10.36 65.47; 45.33 20.14 -5.06 0.58 17.39
IRES_RNA 2IL9 6106!M:6134!M A:U WC [cWW][XX] 10.21 57.08; 55.9 1.17 -6.35 0.17 6.9
IRES_RNA 2IL9 6107!M:6133!M G:C WC [cWW][XIX] 10.88 50.31; 55.8 5.48 -5.42 0.01 12.01
IRES_RNA 2IL9 6108!M:6132!M A:U WC [cWW][XX] 10.63 59.01; 54.01 5.0 -4.87 0.29 27.5
IRES_RNA 2IL9 6112!M:6129!M A:A rpS(sb:O2*-N3) [cSS][-] 5.65 102.26; 137.38 35.13 -62.55 0.26 45.21
IRES_RNA 2IL9 6116!M:6126!M G:C Wb [---][-] 9.85 45.5; 69.06 23.56 -12.98 0.45 13.58
IRES_RNA 2IL9 6117!M:6125!M A:U Wb [---][-] 9.85 47.61; 69.52 21.91 -9.29 0.25 10.56
IRES_RNA 2IL9 6118!M:6124!M G:C Wb* [---][-] 11.11 61.81; 47.85 13.96 1.44 0.12 8.52
IRES_RNA 2IL9 6119!M:6119E!M C:G Wb* [---][-] 11.26 49.49; 64.4 14.91 0.58 0.36 37.03
IRES_RNA 2IL9 6119!A:6119D!M G:A S [tSH][XI] 9.45 97.16; 9.48 87.69 -67.53 0.64 18.42
IRES_RNA 2IL9 6119!A:6119C!M G:A S(sb:O2*-N7) [---][-] 7.78 94.79; 31.32 63.47 -165.26 1.89 32.12