Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2IPY
BPC Identified: 25
Ambiguities: 0
| IRE_RNA |
2IPY |
1!C:30!C |
G:C |
WC [cWW][XIX] |
11.05 |
53.38; 53.79 |
0.4 |
0.39 |
0.37 |
7.57 |
| IRE_RNA |
2IPY |
2!C:29!C |
U:A |
WC [cWW][XX] |
10.57 |
58.3; 55.81 |
2.49 |
-4.83 |
0.31 |
13.33 |
| IRE_RNA |
2IPY |
3!C:28!C |
U:A |
WC [cWW][XX] |
10.42 |
58.76; 59.02 |
0.26 |
-6.14 |
0.18 |
8.79 |
| IRE_RNA |
2IPY |
4!C:27!C |
C:G |
WC [cWW][XIX] |
10.39 |
55.51; 61.46 |
5.95 |
-1.29 |
0.2 |
10.59 |
| IRE_RNA |
2IPY |
5!C:26!C |
U:G |
Wb [cWW][XXVIII] |
10.37 |
67.07; 36.92 |
30.14 |
5.1 |
0.43 |
1.82 |
| IRE_RNA |
2IPY |
7!C:25!C |
G:C |
WC [cWW][XIX] |
10.76 |
53.88; 56.18 |
2.3 |
-5.84 |
0.0 |
10.31 |
| IRE_RNA |
2IPY |
9!C:24!C |
U:A |
WC [cWW][XX] |
10.78 |
56.47; 53.3 |
3.18 |
-12.38 |
0.53 |
10.2 |
| IRE_RNA |
2IPY |
10!C:23!C |
U:A |
WC [cWW][XX] |
10.62 |
50.72; 57.14 |
6.42 |
-10.34 |
0.05 |
12.39 |
| IRE_RNA |
2IPY |
11!C:22!C |
C:G |
WC [cWW][XIX] |
10.59 |
47.99; 57.74 |
9.76 |
-7.97 |
0.04 |
9.43 |
| IRE_RNA |
2IPY |
12!C:21!C |
A:U |
WC [cWW][XX] |
10.09 |
57.06; 61.12 |
4.06 |
-14.04 |
0.07 |
13.96 |
| IRE_RNA |
2IPY |
13!C:20!C |
A:U |
WC [cWW][XX] |
10.43 |
52.71; 54.94 |
2.23 |
-15.38 |
0.16 |
16.1 |
| IRE_RNA |
2IPY |
14!C:18!C |
C:G |
WC [cWW][XIX] |
10.37 |
59.0; 52.39 |
6.62 |
0.37 |
0.69 |
19.49 |
| IRE_RNA |
2IPY |
1!D:30!D |
G:C |
WC [cWW][XIX] |
10.88 |
49.27; 52.54 |
3.28 |
-7.83 |
0.39 |
14.67 |
| IRE_RNA |
2IPY |
2!D:29!D |
U:A |
WC [cWW][XX] |
10.49 |
56.54; 56.14 |
0.39 |
-2.48 |
0.07 |
10.07 |
| IRE_RNA |
2IPY |
3!D:28!D |
U:A |
WC [cWW][XX] |
10.44 |
57.12; 57.66 |
0.54 |
0.92 |
0.21 |
13.62 |
| IRE_RNA |
2IPY |
4!D:27!D |
C:G |
WC [cWW][XIX] |
10.62 |
57.92; 55.35 |
2.57 |
-2.21 |
0.08 |
10.6 |
| IRE_RNA |
2IPY |
5!D:26!D |
U:G |
Wb [cWW][XXVIII] |
10.5 |
65.92; 38.25 |
27.67 |
-0.27 |
0.19 |
10.02 |
| IRE_RNA |
2IPY |
7!D:25!D |
G:C |
WC [cWW][XIX] |
10.72 |
52.84; 58.08 |
5.24 |
-6.38 |
0.14 |
4.46 |
| IRE_RNA |
2IPY |
9!D:24!D |
U:A |
WC [cWW][XX] |
10.62 |
56.63; 52.34 |
4.29 |
-15.03 |
0.3 |
13.82 |
| IRE_RNA |
2IPY |
10!D:23!D |
U:A |
WC [cWW][XX] |
10.01 |
59.65; 59.38 |
0.26 |
-10.76 |
0.06 |
14.42 |
| IRE_RNA |
2IPY |
11!D:22!D |
C:G |
WC [cWW][XIX] |
10.3 |
60.66; 56.66 |
4.0 |
-7.82 |
0.1 |
8.38 |
| IRE_RNA |
2IPY |
12!D:21!D |
A:U |
WC [cWW][XX] |
10.42 |
57.1; 56.52 |
0.58 |
-13.97 |
0.13 |
12.88 |
| IRE_RNA |
2IPY |
13!D:20!D |
A:U |
WC [cWW][XX] |
10.46 |
55.66; 54.82 |
0.85 |
-14.89 |
0.09 |
15.86 |
| IRE_RNA |
2IPY |
14!D:18!D |
C:G |
WC [cWW][XIX] |
10.42 |
60.44; 53.06 |
7.38 |
-2.31 |
0.86 |
19.97 |
| IRE_RNA |
2IPY |
19!D:20!D |
U:U |
rpS(ps:O1P-O2*) [---][-] |
8.91 |
118.06; 89.15 |
28.91 |
162.82 |
0.08 |
36.85 |