Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2IY5
BPC Identified: 32
Ambiguities: 0
| tRNA |
2IY5 |
1!T:72!T |
G:C |
WC [cWW][XIX] |
10.75 |
55.71; 55.07 |
0.64 |
13.11 |
0.49 |
20.41 |
| tRNA |
2IY5 |
2!T:71!T |
C:G |
WC [cWW][XIX] |
10.74 |
54.29; 55.69 |
1.41 |
7.11 |
0.44 |
12.37 |
| tRNA |
2IY5 |
3!T:70!T |
C:G |
WC [cWW][XIX] |
11.2 |
45.55; 54.4 |
8.85 |
0.66 |
0.47 |
7.63 |
| tRNA |
2IY5 |
4!T:69!T |
G:C |
WC [cWW][XIX] |
10.57 |
58.53; 56.37 |
2.16 |
12.81 |
0.39 |
5.86 |
| tRNA |
2IY5 |
5!T:68!T |
A:U |
WC [cWW][XX] |
10.16 |
59.81; 60.85 |
1.04 |
3.92 |
0.36 |
8.04 |
| tRNA |
2IY5 |
6!T:67!T |
G:C |
WC [cWW][XIX] |
10.91 |
54.8; 50.3 |
4.5 |
6.97 |
0.14 |
8.83 |
| tRNA |
2IY5 |
7!T:66!T |
G:C |
WC [cWW][XIX] |
10.84 |
51.38; 51.75 |
0.37 |
-7.48 |
0.63 |
25.05 |
| tRNA |
2IY5 |
8!T:14!T |
U:A |
rH_1 [tWH][XXIV] |
10.8 |
17.73; 21.18 |
3.45 |
-161.01 |
0.1 |
6.25 |
| tRNA |
2IY5 |
9!T:23!T |
A:A |
rS* [tHH][-] |
11.41 |
9.47; 14.46 |
4.99 |
-141.45 |
0.03 |
6.3 |
| tRNA |
2IY5 |
10!T:45!T |
G:U |
H_3 [---][-] |
8.75 |
56.33; 45.12 |
11.21 |
-20.97 |
0.03 |
11.0 |
| tRNA |
2IY5 |
10!T:25!T |
G:C |
WC [cWW][XIX] |
10.34 |
57.31; 55.05 |
2.26 |
46.3 |
0.16 |
38.56 |
| tRNA |
2IY5 |
11!T:25!T |
C:C |
WC [---][-] |
9.13 |
60.19; 52.49 |
7.7 |
3.66 |
1.0 |
21.55 |
| tRNA |
2IY5 |
11!T:24!T |
C:G |
WC [cWW][XIX] |
10.64 |
49.73; 52.88 |
3.15 |
1.34 |
1.24 |
15.71 |
| tRNA |
2IY5 |
12!T:23!T |
U:A |
WC [cWW][XX] |
11.02 |
51.18; 52.49 |
1.31 |
1.5 |
0.12 |
7.92 |
| tRNA |
2IY5 |
13!T:22!T |
C:G |
WC [cWW][XIX] |
10.48 |
58.72; 55.26 |
3.46 |
-1.12 |
0.67 |
14.75 |
| tRNA |
2IY5 |
15!T:48!T |
G:C |
rWb [tWW][XXII] |
11.56 |
31.8; 63.99 |
32.19 |
154.46 |
0.05 |
23.3 |
| tRNA |
2IY5 |
18!T:55!T |
G:U |
fS_2 [---][-] |
10.55 |
40.04; 99.38 |
59.34 |
-175.62 |
0.06 |
12.26 |
| tRNA |
2IY5 |
19!T:56!T |
G:C |
WC [cWW][XIX] |
11.43 |
56.09; 44.75 |
11.35 |
-20.38 |
0.48 |
20.76 |
| tRNA |
2IY5 |
22!T:46!T |
G:G |
rH_1 [tWH][VII] |
11.31 |
28.98; 32.4 |
3.42 |
171.26 |
1.69 |
6.32 |
| tRNA |
2IY5 |
27!T:43!T |
U:A |
WC [cWW][XX] |
10.76 |
54.45; 54.16 |
0.29 |
-12.89 |
0.17 |
18.83 |
| tRNA |
2IY5 |
28!T:42!T |
G:C |
WC [cWW][XIX] |
10.83 |
51.62; 51.69 |
0.06 |
-15.4 |
0.06 |
24.6 |
| tRNA |
2IY5 |
29!T:42!T |
C:C |
Wb [cWW][-] |
9.31 |
43.72; 76.67 |
32.95 |
-2.77 |
2.05 |
19.31 |
| tRNA |
2IY5 |
29!T:41!T |
C:G |
WC [cWW][XIX] |
11.1 |
35.41; 40.74 |
5.32 |
57.42 |
1.54 |
31.97 |
| tRNA |
2IY5 |
30!T:40!T |
G:C |
WC [cWW][XIX] |
11.1 |
44.64; 46.5 |
1.86 |
33.68 |
0.47 |
29.49 |
| tRNA |
2IY5 |
31!T:39!T |
A:U |
WC [cWW][XX] |
11.18 |
49.73; 47.18 |
2.55 |
4.73 |
0.51 |
3.09 |
| tRNA |
2IY5 |
32!T:38!T |
C:A |
rH_2_Mo [---][-] |
11.77 |
52.22; 5.88 |
46.34 |
4.24 |
0.09 |
5.0 |
| tRNA |
2IY5 |
49!T:65!T |
C:G |
WC [cWW][XIX] |
10.89 |
48.89; 52.17 |
3.28 |
3.71 |
0.41 |
9.35 |
| tRNA |
2IY5 |
50!T:64!T |
G:C |
WC [cWW][XIX] |
11.03 |
51.32; 52.02 |
0.7 |
6.92 |
0.24 |
15.37 |
| tRNA |
2IY5 |
51!T:63!T |
C:G |
WC [cWW][XIX] |
10.57 |
56.05; 55.05 |
1.0 |
-4.06 |
0.52 |
1.41 |
| tRNA |
2IY5 |
52!T:62!T |
G:C |
WC [cWW][XIX] |
10.67 |
53.2; 54.64 |
1.44 |
14.85 |
0.74 |
2.24 |
| tRNA |
2IY5 |
53!T:61!T |
G:C |
WC [cWW][XIX] |
9.76 |
49.76; 65.24 |
15.48 |
55.91 |
0.2 |
55.36 |
| tRNA |
2IY5 |
54!T:61!T |
U:C |
Wb [---][-] |
7.82 |
84.71; 44.96 |
39.75 |
32.73 |
1.01 |
40.24 |