Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2NOK BPC Identified: 40 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
IRES_RNA 2NOK 47!A:116!B C:G WC [cWW][XIX] 10.96 49.24; 50.53 1.29 -15.07 0.34 13.1
IRES_RNA 2NOK 48!A:115!B G:C WC [cWW][XIX] 10.63 51.76; 55.78 4.02 -7.11 0.01 8.9
IRES_RNA 2NOK 49!A:114!B G:C WC [cWW][XIX] 10.87 53.37; 49.88 3.49 -7.56 0.18 10.98
IRES_RNA 2NOK 50!A:113!B A:U WC [cWW][XX] 10.53 57.93; 47.65 10.29 -5.79 0.07 5.55
IRES_RNA 2NOK 51!A:112!B G:C WC [cWW][XIX] 10.84 51.67; 45.38 6.28 -10.5 0.24 6.14
IRES_RNA 2NOK 52!A:111!B G:C WC [cWW][XIX] 10.91 50.57; 50.3 0.28 -11.8 0.01 18.91
IRES_RNA 2NOK 53!A:57!C A:A rpS(sb:O2*-N3) [cSS][-] 6.05 144.44; 93.72 50.72 -32.59 2.1 41.52
IRES_RNA 2NOK 55!A:57!A C:A S(sb:O2*-N6) [---][-] 8.65 157.08; 18.86 138.21 -147.15 0.18 82.87
IRES_RNA 2NOK 57!A:53!C A:A rpS(sb:O2*-N3) [cSS][-] 5.89 96.66; 142.74 46.08 -33.94 1.59 31.69
IRES_RNA 2NOK 58!A:110!B C:G WC [cWW][XIX] 11.11 49.39; 50.3 0.91 0.42 0.23 13.19
IRES_RNA 2NOK 59!A:109!B U:A WC [cWW][XX] 10.73 46.03; 53.73 7.7 -7.55 0.1 21.6
IRES_RNA 2NOK 60!A:108!B G:C WC [cWW][XIX] 10.36 49.95; 59.82 9.87 -7.44 0.24 11.58
IRES_RNA 2NOK 61!A:107!B U:G Wb [cWW][XXVIII] 10.82 56.08; 34.56 21.52 -8.88 0.36 6.75
IRES_RNA 2NOK 62!A:105!B C:G WC [cWW][XIX] 11.06 53.27; 56.89 3.62 -8.03 0.39 19.79
IRES_RNA 2NOK 63!A:104!B U:C WC [cWW][XVIII] 9.13 61.49; 44.62 16.87 -10.76 0.63 21.06
IRES_RNA 2NOK 64!A:103!B U:U Wb [cWW][XVI] 9.64 38.44; 61.63 23.18 -1.79 0.57 15.9
IRES_RNA 2NOK 65!A:102!B C:G WC_Mo [cWW][XIX] 10.9 63.13; 58.31 4.82 1.82 0.52 7.42
IRES_RNA 2NOK 66!A:101!B A:U WC [cWW][XX] 11.23 45.47; 56.71 11.24 -4.04 0.5 2.99
IRES_RNA 2NOK 67!A:100!B C:G WC [cWW][XIX] 10.29 68.8; 57.52 11.28 -4.16 0.34 16.15
IRES_RNA 2NOK 68!A:99!B G:C WC [cWW][XIX] 11.32 52.63; 47.75 4.88 -5.22 0.12 7.55
IRES_RNA 2NOK 69!A:98!B C:G WC [cWW][XIX] 10.77 56.51; 55.1 1.41 -10.82 0.24 15.42
IRES_RNA 2NOK 47!C:116!D C:G WC [cWW][XIX] 10.91 42.5; 52.59 10.09 -8.43 0.13 9.28
IRES_RNA 2NOK 48!C:115!D G:C WC [cWW][XIX] 10.79 49.89; 48.15 1.75 -0.81 0.0 1.98
IRES_RNA 2NOK 49!C:114!D G:C WC [cWW][XIX] 10.99 52.33; 49.04 3.29 1.64 0.16 15.29
IRES_RNA 2NOK 50!C:113!D A:U WC [cWW][XX] 10.74 57.01; 47.25 9.76 -8.28 0.19 12.42
IRES_RNA 2NOK 51!C:112!D G:C WC [cWW][XIX] 10.53 52.81; 51.85 0.97 -6.76 0.28 6.02
IRES_RNA 2NOK 52!C:111!D G:C WC [cWW][XIX] 10.68 51.95; 56.32 4.37 -9.86 0.07 20.73
IRES_RNA 2NOK 55!C:57!C C:A S(sb:O2*-N6) [---][-] 8.67 151.28; 16.64 134.64 -130.13 0.6 89.79
IRES_RNA 2NOK 58!C:110!D C:G WC [cWW][XIX] 11.21 48.28; 51.1 2.82 -7.61 0.02 9.7
IRES_RNA 2NOK 59!C:109!D U:A WC [cWW][XX] 10.88 47.49; 58.85 11.36 -12.77 0.45 27.66
IRES_RNA 2NOK 60!C:108!D G:C WC [cWW][XIX] 10.58 55.9; 54.06 1.84 -5.15 0.16 9.69
IRES_RNA 2NOK 61!C:107!D U:G Wb [cWW][XXVIII] 10.26 67.47; 39.12 28.35 -6.46 0.43 10.12
IRES_RNA 2NOK 62!C:105!D C:G WC [cWW][XIX] 10.79 50.46; 52.75 2.29 4.26 0.13 11.21
IRES_RNA 2NOK 63!C:104!D U:C H_1 [---][-] 8.6 66.77; 51.41 15.36 -11.42 0.61 29.39
IRES_RNA 2NOK 64!C:103!D U:U Wb [cWW][XVI] 9.09 47.06; 69.07 22.01 -5.34 0.8 18.13
IRES_RNA 2NOK 65!C:102!D C:G WC [cWW][XIX] 10.53 58.2; 59.31 1.12 -7.0 0.7 20.08
IRES_RNA 2NOK 66!C:101!D A:U WC [cWW][XX] 10.22 53.06; 64.89 11.83 -1.79 0.61 2.28
IRES_RNA 2NOK 67!C:100!D C:G WC [cWW][XIX] 11.32 46.81; 39.57 7.24 -14.86 0.0 16.54
IRES_RNA 2NOK 68!C:99!D G:C WC [cWW][XIX] 10.88 57.27; 50.08 7.19 -17.78 0.47 16.5
IRES_RNA 2NOK 69!C:98!D C:G WC [cWW][XIX] 11.68 40.2; 52.68 12.47 -6.56 0.03 11.35