Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2NOQ BPC Identified: 139 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
IRES_RNA 2NOQ 4!A:69!A A:U WC [cWW][XX] 10.74 53.46; 54.77 1.31 2.97 0.04 6.12
IRES_RNA 2NOQ 5!A:68!A A:U WC [cWW][XX] 10.72 53.62; 55.03 1.42 3.01 0.1 6.65
IRES_RNA 2NOQ 6!A:67!A A:U WC [cWW][XX] 10.75 53.09; 54.49 1.41 6.79 0.08 10.21
IRES_RNA 2NOQ 7!A:66!A A:U WC [cWW][XX] 10.72 53.33; 54.93 1.6 1.44 0.25 3.24
IRES_RNA 2NOQ 8!A:65!A A:U WC [cWW][XX] 10.65 54.22; 55.5 1.28 5.33 0.07 14.12
IRES_RNA 2NOQ 14!A:62!A U:C rS* [tHH][-] 11.71 17.63; 36.54 18.91 -15.84 0.45 23.83
IRES_RNA 2NOQ 17!A:58!A U:A WC [cWW][XX] 10.64 53.17; 49.94 3.23 18.89 0.35 38.07
IRES_RNA 2NOQ 18!A:57!A G:U Wb [cWW][XXVIII] 10.61 42.12; 67.57 25.45 4.12 0.04 12.25
IRES_RNA 2NOQ 19!A:56!A C:G WC [cWW][XIX] 10.76 54.43; 53.53 0.9 1.56 0.06 7.09
IRES_RNA 2NOQ 20!A:55!A U:A WC [cWW][XX] 10.73 54.92; 53.43 1.49 0.72 0.05 4.7
IRES_RNA 2NOQ 21!A:54!A U:A WC [cWW][XX] 10.74 54.66; 53.16 1.5 5.09 0.14 9.96
IRES_RNA 2NOQ 22!A:53!A G:C WC [cWW][XIX] 10.75 53.47; 54.66 1.19 4.23 0.21 10.33
IRES_RNA 2NOQ 23!A:52!A U:A WC [cWW][XX] 10.7 55.24; 53.55 1.69 4.37 0.31 10.52
IRES_RNA 2NOQ 24!A:51!A A:U WC [cWW][XX] 10.71 53.49; 55.17 1.68 3.77 0.3 9.85
IRES_RNA 2NOQ 25!A:50!A A:U WC [cWW][XX] 10.76 52.94; 54.29 1.34 3.21 0.1 4.6
IRES_RNA 2NOQ 27!A:48!A U:A WC [cWW][XX] 10.81 50.97; 51.63 0.66 -22.09 0.55 19.47
IRES_RNA 2NOQ 28!A:134!A A:G pS(sp:O2*-O1P)_2 [---][-] 9.5 89.15; 144.65 55.5 -40.69 0.43 29.55
IRES_RNA 2NOQ 36!A:144!A G:C WC [cWW][XIX] 10.73 53.97; 54.71 0.74 6.45 0.26 14.71
IRES_RNA 2NOQ 37!A:143!A A:U WC [cWW][XX] 10.68 53.56; 55.38 1.82 1.39 0.48 8.82
IRES_RNA 2NOQ 38!A:142!A G:C WC [cWW][XIX] 10.79 53.19; 54.07 0.88 -1.57 0.07 3.79
IRES_RNA 2NOQ 39!A:141!A A:U WC [cWW][XX] 10.7 53.78; 54.55 0.77 -7.62 0.17 9.49
IRES_RNA 2NOQ 40!A:140!A G:C WC [cWW][XIX] 10.77 53.22; 54.21 1.0 7.02 0.12 11.14
IRES_RNA 2NOQ 48!A:131!A A:C rpS(ss:O2*-O2*)_1 [cSS][-] 4.88 156.44; 152.49 3.95 -69.75 0.1 16.84
IRES_RNA 2NOQ 70!A:72!A G:A S(sb:O2*-N7) [---][-] 6.81 76.2; 31.85 44.35 -171.08 2.13 29.06
IRES_RNA 2NOQ 76!A:110!A A:U WC [cWW][XX] 10.83 51.28; 53.32 2.04 -15.54 0.12 12.75
IRES_RNA 2NOQ 77!A:109!A G:C WC [cWW][XIX] 10.65 53.74; 56.31 2.57 -3.95 0.03 16.62
IRES_RNA 2NOQ 78!A:126!A G:A rS [tSS][-] 7.78 86.33; 56.9 29.43 176.31 0.11 32.57
IRES_RNA 2NOQ 78!A:108!A G:C WC [cWW][XIX] 10.68 53.8; 54.37 0.57 -4.16 0.51 6.56
IRES_RNA 2NOQ 79!A:107!A U:G Wb [cWW][XXVIII] 10.53 68.31; 42.65 25.66 -8.39 0.34 9.26
IRES_RNA 2NOQ 80!A:130!A U:C fS [tSW][-] 8.51 91.47; 21.24 70.23 104.95 0.38 27.3
IRES_RNA 2NOQ 81!A:92!A A:U WC [cWW][XX] 10.66 54.43; 56.21 1.77 -0.66 0.22 5.37
IRES_RNA 2NOQ 82!A:91!A G:C WC [cWW][XIX] 10.64 53.46; 55.3 1.84 -5.47 0.64 20.51
IRES_RNA 2NOQ 83!A:90!A C:G WC [cWW][XIX] 10.75 54.71; 53.91 0.8 -0.55 0.22 8.3
IRES_RNA 2NOQ 84!A:89!A U:A WC [cWW][XX] 10.73 54.96; 53.22 1.74 3.55 0.05 7.91
IRES_RNA 2NOQ 94!A:102!A U:A rH_1 [tWH][XXIV] 9.71 28.61; 19.44 9.16 179.59 0.17 16.22
IRES_RNA 2NOQ 95!A:133!A A:G rS* [tHH][-] 12.73 6.14; 6.48 0.34 -28.49 0.4 15.65
IRES_RNA 2NOQ 97!A:137!A G:G S_1 [tSH][-] 10.58 21.59; 98.59 77.0 4.0 1.19 2.05
IRES_RNA 2NOQ 98!A:137!A U:G pfS*_1 [cWS][-] 8.0 54.1; 130.17 76.06 -8.21 1.84 9.89
IRES_RNA 2NOQ 98!A:136!A U:A WC [cWW][XX] 10.7 54.76; 53.65 1.11 -1.85 0.45 10.56
IRES_RNA 2NOQ 99!A:135!A U:A WC [cWW][XX] 10.69 55.24; 53.47 1.76 -2.54 0.4 8.83
IRES_RNA 2NOQ 100!A:134!A C:G WC [cWW][XIX] 10.81 53.99; 52.82 1.17 -3.66 0.07 2.39
IRES_RNA 2NOQ 101!A:133!A C:G WC [cWW][XIX] 10.79 53.62; 51.99 1.64 -0.13 0.57 2.48
IRES_RNA 2NOQ 103!A:131!A G:C WC [cWW][XIX] 10.65 54.93; 55.25 0.33 9.09 0.59 19.23
IRES_RNA 2NOQ 103!A:130!A G:C WC_mo [cWW][XIX] 12.83 42.68; 29.28 13.4 13.52 2.29 17.71
IRES_RNA 2NOQ 104!A:130!A G:C WC [cWW][XIX] 10.73 52.07; 55.03 2.96 4.08 0.2 11.37
IRES_RNA 2NOQ 105!A:129!A A:U WC [cWW][XX] 10.86 51.03; 52.47 1.44 12.8 0.17 14.92
IRES_RNA 2NOQ 106!A:128!A U:A WC [cWW][XX] 10.57 55.92; 55.51 0.41 6.36 0.33 14.24
IRES_RNA 2NOQ 108!A:126!A C:A rpS(bs:O2-O2*) [cSS][-] 6.17 96.45; 148.32 51.87 -60.28 0.6 26.03
IRES_RNA 2NOQ 112!A:124!A G:C WC [cWW][XIX] 10.72 54.53; 54.06 0.46 10.96 0.17 18.15
IRES_RNA 2NOQ 113!A:123!A U:A WC [cWW][XX] 10.84 52.57; 52.04 0.53 9.0 0.05 11.44
IRES_RNA 2NOQ 114!A:122!A G:C WC [cWW][XIX] 10.79 52.68; 54.08 1.4 7.45 0.11 11.09
IRES_RNA 2NOQ 115!A:121!A G:C WC [cWW][XIX] 10.8 52.81; 53.17 0.36 -9.7 0.32 7.72
IRES_RNA 2NOQ 148!A:176!A G:C Wb [---][-] 10.25 51.5; 74.61 23.11 -9.24 0.18 4.88
IRES_RNA 2NOQ 150!A:174!A U:A Wb* [---][-] 10.08 45.86; 77.94 32.08 -34.34 1.17 38.31
IRES_RNA 2NOQ 152!A:181!A U:A pS [cSH][-] 8.27 117.35; 24.95 92.39 -33.5 2.51 17.93
IRES_RNA 2NOQ 152!A:172!A U:A WC [cWW][XX] 10.42 57.01; 54.76 2.25 -8.35 0.21 22.91
IRES_RNA 2NOQ 153!A:171!A U:A WC [cWW][XX] 10.69 54.92; 53.59 1.33 -3.53 0.39 12.64
IRES_RNA 2NOQ 154!A:170!A U:A WC [cWW][XX] 10.76 54.1; 52.91 1.19 -2.01 0.07 8.58
IRES_RNA 2NOQ 155!A:169!A C:G WC [cWW][XIX] 10.78 54.27; 53.22 1.05 -6.61 0.3 8.24
IRES_RNA 2NOQ 158!A:187!A A:A H_1 [---][-] 10.01 81.08; 30.38 50.7 -4.42 1.48 21.75
IRES_RNA 2NOQ 158!A:164!A A:U srWC* [---][-] 13.76 30.63; 8.47 22.16 -28.7 1.11 19.96
IRES_RNA 2NOQ 159!A:1207!D U:G fS*_2 [---][-] 11.34 22.32; 92.83 70.5 -59.58 0.57 64.3
IRES_RNA 2NOQ 161!A:190!A A:U WC [cWW][XX] 10.64 53.9; 55.8 1.9 -5.36 0.5 11.83
IRES_RNA 2NOQ 163!A:188!A G:C WC [cWW][XIX] 10.79 52.12; 53.89 1.77 -7.45 0.23 11.95
IRES_RNA 2NOQ 164!A:187!A U:A WC [cWW][XX] 10.76 54.38; 52.48 1.9 -4.01 0.01 4.16
IRES_RNA 2NOQ 165!A:186!A A:U WC [cWW][XX] 9.5 67.35; 67.42 0.07 -26.89 0.53 25.57
IRES_RNA 2NOQ 166!A:185!A G:U Wb [cWW][XXVIII] 10.63 41.91; 65.73 23.82 -15.75 0.38 14.98
IRES_RNA 2NOQ 171!A:183!A A:A pfS [cSW][-] 9.54 119.85; 35.62 84.23 -0.36 0.06 4.46
IRES_RNA 2NOQ 175!A:178!A C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.52 145.41; 133.62 11.79 -74.45 0.26 29.37
IRES_RNA 2NOQ 500B:545!B G:C WC [cWW][XIX] 10.55 50.68; 63.96 13.27 -4.61 0.13 6.74
IRES_RNA 2NOQ 501B:544!B C:G WC [cWW][XIX] 10.61 56.19; 51.17 5.02 1.74 0.23 16.74
IRES_RNA 2NOQ 502B:543!B G:C WC [cWW][XIX] 10.81 52.64; 49.64 3.0 2.89 0.15 4.43
IRES_RNA 2NOQ 503B:542!B C:G WC [cWW][XIX] 10.48 54.77; 56.2 1.43 -4.12 0.0 6.89
IRES_RNA 2NOQ 503B:510!B C:A fS(sb:O2*-N1)_1 [tSS][-] 8.47 83.87; 58.35 25.51 160.16 1.09 33.5
IRES_RNA 2NOQ 504B:541!B C:G WC [cWW][XIX] 10.57 53.17; 57.7 4.53 1.05 0.17 13.88
IRES_RNA 2NOQ 505B:534!B G:U pfS*(sb:O2*-O2P) [---][-] 7.31 123.94; 50.63 73.31 -166.71 0.45 75.94
IRES_RNA 2NOQ 505B:526!B G:C WC [cWW][XIX] 10.52 52.78; 56.18 3.4 -5.72 0.38 15.21
IRES_RNA 2NOQ 506B:525!B G:C WC [cWW][XIX] 10.54 54.97; 54.29 0.68 -11.05 0.53 6.76
IRES_RNA 2NOQ 507B:524!B C:G WC [cWW][XIX] 10.65 56.6; 51.73 4.87 -0.32 0.01 4.27
IRES_RNA 2NOQ 508B:510!B C:A pS [cSH][-] 9.47 124.7; 19.94 104.76 51.1 0.65 31.98
IRES_RNA 2NOQ 509B:543!B A:C rpS(sb:O2*-N3) [cSS][-] 5.36 90.06; 157.66 67.61 -25.38 0.23 30.44
IRES_RNA 2NOQ 510B:542!B A:G rpS [cSS][-] 5.15 151.68; 109.42 42.26 -29.4 0.73 29.41
IRES_RNA 2NOQ 511B:540!B C:G WC [cWW][XIX] 10.39 56.07; 55.2 0.86 6.15 0.06 5.42
IRES_RNA 2NOQ 512B:539!B U:A WC [cWW][XX] 10.76 52.84; 59.18 6.35 -2.85 0.47 12.9
IRES_RNA 2NOQ 513B:538!B C:G WC [cWW][XIX] 10.75 52.43; 53.9 1.47 8.07 0.27 8.03
IRES_RNA 2NOQ 514B:537!B C:G WC [cWW][XIX] 10.64 54.65; 56.77 2.12 3.64 0.15 9.1
IRES_RNA 2NOQ 515B:536!B G:C WC [cWW][XIX] 10.54 50.55; 55.69 5.14 -8.42 0.18 13.3
IRES_RNA 2NOQ 516B:533!B U:A rH_1 [tWH][XXIV] 9.41 39.08; 19.81 19.27 -165.46 0.03 18.47
IRES_RNA 2NOQ 516B:519!B U:C pfS [cSW][-] 8.3 133.0; 33.28 99.71 -45.52 1.9 41.78
IRES_RNA 2NOQ 520B:533!B A:A rWb* [tWW][I] 14.27 37.07; 14.02 23.06 -171.15 0.49 53.12
IRES_RNA 2NOQ 520B:529!B A:G S [tSH][XI] 9.32 11.34; 101.07 89.73 -31.1 0.29 11.76
IRES_RNA 2NOQ 521B:528!B G:C WC [cWW][XIX] 10.44 51.64; 55.49 3.86 22.92 0.85 11.1
IRES_RNA 2NOQ 522B:527!B C:G WC [cWW][XIX] 10.34 56.74; 56.32 0.42 8.48 0.2 25.46
IRES_RNA 2NOQ 527B:535!B G:A rS [tSS][-] 8.54 94.68; 49.94 44.74 137.52 2.18 54.52
IRES_RNA 2NOQ 1050!C:1208!D G:C WC [cWW][XIX] 10.44 57.42; 60.38 2.96 5.29 0.24 6.46
IRES_RNA 2NOQ 1051!C:1207!D C:G WC [cWW][XIX] 10.53 56.23; 54.47 1.76 6.82 0.1 7.13
IRES_RNA 2NOQ 1052!C:1206!D U:G Wb [cWW][XXVIII] 10.78 64.85; 36.04 28.82 7.96 0.01 9.6
IRES_RNA 2NOQ 1052!C:1055!C U:A pS(sp:O2*-O2P) [---][-] 8.39 93.46; 53.97 39.49 6.28 1.47 7.91
IRES_RNA 2NOQ 1053!C:1057!C G:G H_1 [cWH][VI] 11.31 66.92; 30.53 36.39 10.13 0.46 13.72
IRES_RNA 2NOQ 1055!C:1205!D A:U sWC [---][-] 10.46 33.13; 96.91 63.78 7.77 0.09 19.74
IRES_RNA 2NOQ 1055!C:1200!D A:C rH_1 [rWH][XXV] 11.18 16.71; 21.01 4.29 124.34 0.55 19.85
IRES_RNA 2NOQ 1056!C:1204!D U:A WC [cWW][XX] 10.36 56.87; 59.3 2.44 5.37 0.59 18.54
IRES_RNA 2NOQ 1057!C:1203!D G:C WC [cWW][XIX] 10.87 54.96; 47.18 7.78 5.53 0.71 26.46
IRES_RNA 2NOQ 1058!C:1202!D G:G S_1 [tSH][-] 11.21 88.52; 17.37 71.15 39.93 0.93 23.35
IRES_RNA 2NOQ 1058!C:1199!D G:U Wb [cWW][XXVIII] 10.46 36.74; 64.11 27.37 1.57 0.27 16.41
IRES_RNA 2NOQ 1059!C:1198!D C:G WC [cWW][XIX] 10.44 55.37; 55.05 0.32 6.1 0.05 23.95
IRES_RNA 2NOQ 1060!C:1197!D C:G WC [cWW][XIX] 10.6 55.0; 51.67 3.33 -4.27 0.33 24.52
IRES_RNA 2NOQ 1061!C:1195!D G:C WC [cWW][XIX] 10.71 55.87; 55.47 0.41 -7.61 0.47 8.28
IRES_RNA 2NOQ 1062!C:1194!D U:U Wb [cWW][XVI] 9.01 71.93; 42.92 29.01 -9.08 0.19 18.43
IRES_RNA 2NOQ 1199!D:1202!D U:G pS(sp:O2*-O1P) [---][-] 9.72 128.86; 44.81 84.05 -31.26 0.74 26.59
IRES_RNA 2NOQ 1200!D:1205!D C:U fS* [tWS][-] 8.5 82.13; 27.0 55.12 152.06 0.59 22.16
IRES_RNA 2NOQ 2138!E:2190!E G:C WC [cWW][XIX] 10.45 52.34; 62.08 9.74 -4.31 0.75 25.82
IRES_RNA 2NOQ 2139!E:2189!E G:C WC [cWW][XIX] 10.54 50.96; 54.33 3.37 -6.85 0.04 6.91
IRES_RNA 2NOQ 2140!E:2188!E G:C WC [cWW][XIX] 10.43 52.49; 57.57 5.07 -3.92 0.01 6.6
IRES_RNA 2NOQ 2141!E:2187!E A:U WC [cWW][XX] 9.93 59.37; 58.81 0.56 -12.08 0.01 18.37
IRES_RNA 2NOQ 2141!E:2186!E A:U WC_mo [cWW][XX] 12.62 40.16; 33.6 6.56 15.38 2.66 23.78
IRES_RNA 2NOQ 2142!E:2186!E U:U Wb [cWW][XVI] 8.42 78.41; 46.02 32.38 -16.49 0.13 18.0
IRES_RNA 2NOQ 2143!E:2185!E G:C WC [cWW][XIX] 10.33 56.22; 57.11 0.89 -1.89 0.1 9.08
IRES_RNA 2NOQ 2145!E:2175!E G:A rS* [tHH][-] 12.71 11.83; 19.6 7.76 29.48 0.53 23.69
IRES_RNA 2NOQ 2147!E:2173!E A:U rpS(sb:O2*-N3) [cSS][-] 5.66 93.95; 143.16 49.21 -48.68 1.65 8.34
IRES_RNA 2NOQ 2147!E:2152!E A:A rH [tWH][V] 11.78 20.34; 19.79 0.56 -173.17 0.06 14.84
IRES_RNA 2NOQ 2148!E:2177!E G:A fS [tSW][X] 9.73 109.22; 12.31 96.92 -138.68 0.59 20.38
IRES_RNA 2NOQ 2150!E:2178!E A:U WC [cWW][XX] 10.61 50.71; 57.98 7.27 -21.46 0.1 11.6
IRES_RNA 2NOQ 2152!E:2174!E A:G fS [tSW][X] 9.64 13.7; 111.41 97.71 -106.88 0.11 23.65
IRES_RNA 2NOQ 2153!E:2184!E G:C WC [cWW][XIX] 10.65 53.91; 56.2 2.3 -7.25 0.25 10.17
IRES_RNA 2NOQ 2154!E:2183!E G:C WC [cWW][XIX] 10.44 56.02; 54.68 1.34 -5.82 0.6 17.7
IRES_RNA 2NOQ 2155!E:2182!E U:A WC [cWW][XX] 10.36 56.2; 57.25 1.05 -9.98 0.03 11.75
IRES_RNA 2NOQ 2156!E:2181!E G:C WC [cWW][XIX] 10.48 54.41; 57.68 3.27 -11.08 0.04 10.49
IRES_RNA 2NOQ 2157!E:2180!E G:C WC [cWW][XIX] 10.34 58.06; 55.23 2.82 -12.1 0.15 20.15
IRES_RNA 2NOQ 2158!E:2179!E G:A S [tSH][XI] 9.46 95.95; 3.21 92.75 -25.46 0.52 13.44
IRES_RNA 2NOQ 2159!E:2168!E A:G rS [tSS][-] 8.31 59.32; 92.27 32.95 132.53 1.13 51.21
IRES_RNA 2NOQ 2160!E:2179!E G:A rS [tSS][-] 7.85 84.97; 56.55 28.42 -152.38 1.71 57.94
IRES_RNA 2NOQ 2160!E:2167!E G:C WC [cWW][XIX] 10.31 54.97; 62.74 7.77 3.57 0.11 11.85
IRES_RNA 2NOQ 2161!E:2166!E C:G WC [cWW][XIX] 10.56 57.66; 52.79 4.87 9.29 0.04 8.98
IRES_RNA 2NOQ 2162!E:2165!E G:A S [tSH][XI] 8.95 99.36; 12.92 86.44 -80.91 0.82 17.98
IRES_RNA 2NOQ 2162!E:2164!E G:A S(sb:O2*-N7) [---][-] 7.21 93.19; 29.04 64.14 -163.87 1.91 31.98
IRES_RNA 2NOQ 2172!E:2178!E G:U rH*_2 [---][-] 12.81 41.61; 15.24 26.36 145.91 0.21 15.43
IRES_RNA 2NOQ 2173!E:2177!E U:A rH_1 [tWH][XXIV] 9.7 38.34; 12.95 25.39 -167.61 0.09 15.53
IRES_RNA 2NOQ 2174!E:2176!E G:A S(sb:O2*-N7) [---][-] 6.96 86.42; 29.05 57.36 -161.22 1.23 30.84