Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2NPY BPC Identified: 29 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 2NPY 2!A:13!B C:G WC [cWW][XIX] 10.6 56.99; 55.24 1.74 -8.89 0.02 18.38
HP_ribozyme 2NPY 3!A:12!B C:G WC [cWW][XIX] 10.6 54.34; 56.34 2.0 -3.57 0.09 6.19
HP_ribozyme 2NPY 4!A:11!B C:G WC [cWW][XIX] 10.66 56.67; 53.97 2.71 4.2 0.04 5.05
HP_ribozyme 2NPY 6!A:25!C G:C WC [cWW][XIX] 10.55 51.88; 54.61 2.73 -15.42 0.66 22.34
HP_ribozyme 2NPY 7!A:8!B U:G S*_1 [tHS][-] 10.98 11.87; 99.82 87.95 35.96 0.35 23.29
HP_ribozyme 2NPY 8!A:7!B C:A Wb* [cWW][-] 11.3 44.09; 71.9 27.82 -5.84 0.1 20.9
HP_ribozyme 2NPY 9!A:6!B C:G WC [cWW][XIX] 10.82 54.38; 58.27 3.88 -5.41 0.25 12.47
HP_ribozyme 2NPY 10!A:5!B A:U WC [cWW][XX] 10.69 56.35; 52.33 4.02 -9.26 0.05 11.07
HP_ribozyme 2NPY 11!A:4!B C:G WC [cWW][XIX] 10.61 57.74; 55.64 2.1 -7.09 0.17 11.76
HP_ribozyme 2NPY 12!A:3!B C:G WC [cWW][XIX] 10.55 53.82; 55.56 1.74 -11.6 0.31 12.53
HP_ribozyme 2NPY 13!A:2!B G:C WC [cWW][XIX] 10.49 57.2; 55.66 1.54 -9.81 0.22 10.73
HP_ribozyme 2NPY 10!B:25!C A:C rpS(sb:O2*-N3) [cSS][-] 5.6 94.84; 148.01 53.17 -70.16 0.88 45.54
HP_ribozyme 2NPY 11!B:24!C G:A rpS(sb:O2*-N3) [---][-] 5.28 153.24; 96.88 56.36 -75.13 1.1 43.43
HP_ribozyme 2NPY 15!C:49!D G:C WC [cWW][XIX] 10.81 52.81; 56.07 3.26 -7.49 0.24 7.94
HP_ribozyme 2NPY 16!C:48!D G:C WC [cWW][XIX] 10.83 52.43; 53.06 0.62 -5.42 0.42 14.12
HP_ribozyme 2NPY 17!C:47!D C:G WC [cWW][XIX] 10.68 55.27; 55.74 0.47 -6.01 0.14 9.73
HP_ribozyme 2NPY 18!C:46!D A:U WC [cWW][XX] 10.37 56.94; 58.01 1.07 -4.58 0.04 9.22
HP_ribozyme 2NPY 19!C:45!D G:C WC [cWW][XIX] 10.44 54.52; 58.07 3.55 0.73 0.11 8.82
HP_ribozyme 2NPY 20!C:44!D A:C Wb* [cWW][-] 10.54 76.17; 48.35 27.82 1.84 0.28 14.1
HP_ribozyme 2NPY 21!C:43!D G:A S [tSH][XI] 9.63 98.19; 2.58 95.6 45.28 0.08 4.75
HP_ribozyme 2NPY 22!C:41!D A:U rH_1 [tWH][XXIV] 9.79 19.88; 31.99 12.11 -163.27 0.63 13.72
HP_ribozyme 2NPY 23!C:40!D A:A rH_Mo [tWH][V] 12.81 11.27; 31.93 20.66 -169.21 0.53 17.63
HP_ribozyme 2NPY 24!C:38!D A:A rH_mo [tWH][V] 11.93 10.1; 36.81 26.71 168.09 0.79 22.88
HP_ribozyme 2NPY 26!C:36!D A:G WC [cWW][VIII] 12.81 45.87; 48.72 2.85 -18.19 0.05 18.4
HP_ribozyme 2NPY 27!C:35!D C:G WC [cWW][XIX] 10.68 53.27; 52.26 1.01 -19.87 0.38 21.82
HP_ribozyme 2NPY 28!C:34!D A:U WC [cWW][XX] 10.6 54.13; 54.06 0.07 -15.39 0.39 21.82
HP_ribozyme 2NPY 29!C:33!D C:G WC [cWW][XIX] 10.62 55.66; 55.1 0.56 -10.16 0.39 16.55
HP_ribozyme 2NPY 30!C:32!D G:C WC [cWW][XIX] 10.93 53.25; 53.05 0.19 -8.29 0.02 12.19
HP_ribozyme 2NPY 31!C:31!D A:U WC [cWW][XX] 10.71 60.77; 50.3 10.46 -2.71 0.01 9.47