Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2NPZ BPC Identified: 27 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 2NPZ 2!A:13!B C:G WC [cWW][XIX] 10.47 55.26; 52.57 2.69 -9.72 0.06 30.33
HP_ribozyme 2NPZ 3!A:12!B C:G WC [cWW][XIX] 10.68 53.68; 56.41 2.73 -2.36 0.19 7.08
HP_ribozyme 2NPZ 4!A:11!B C:G WC [cWW][XIX] 10.87 55.69; 57.43 1.74 8.17 0.28 11.5
HP_ribozyme 2NPZ 6!A:25!C G:C WC [cWW][XIX] 11.09 42.77; 52.08 9.31 -14.86 0.45 8.68
HP_ribozyme 2NPZ 7!A:8!B U:G S*_1 [tHS][-] 10.9 8.87; 107.99 99.12 30.17 0.17 20.12
HP_ribozyme 2NPZ 9!A:6!B C:G WC [cWW][XIX] 11.42 52.19; 58.42 6.23 -4.6 0.53 15.83
HP_ribozyme 2NPZ 10!A:5!B A:U WC [cWW][XX] 11.18 53.13; 53.01 0.12 -12.33 0.07 17.74
HP_ribozyme 2NPZ 11!A:4!B C:G WC [cWW][XIX] 10.65 52.42; 56.1 3.68 -6.59 0.12 12.65
HP_ribozyme 2NPZ 12!A:3!B C:G WC [cWW][XIX] 10.47 55.87; 59.14 3.28 -0.31 0.06 10.01
HP_ribozyme 2NPZ 13!A:2!B G:C WC [cWW][XIX] 11.4 52.57; 45.38 7.19 -4.58 0.16 13.7
HP_ribozyme 2NPZ 10!B:25!C A:C rpS(sb:O2*-N3) [cSS][-] 5.2 101.58; 147.73 46.15 -67.83 0.06 61.1
HP_ribozyme 2NPZ 11!B:24!C G:A rpS(sb:O2*-N3) [---][-] 5.8 150.1; 97.29 52.81 -81.1 1.49 53.62
HP_ribozyme 2NPZ 15!C:49!D G:C WC [cWW][XIX] 10.44 52.35; 64.33 11.98 0.37 0.57 11.04
HP_ribozyme 2NPZ 16!C:48!D G:C WC [cWW][XIX] 10.5 55.49; 61.77 6.28 -0.69 0.33 4.4
HP_ribozyme 2NPZ 17!C:47!D C:G WC [cWW][XIX] 10.69 59.68; 53.69 5.99 -0.01 0.08 2.45
HP_ribozyme 2NPZ 18!C:46!D A:U WC [cWW][XX] 10.48 57.35; 57.18 0.16 6.0 0.05 9.77
HP_ribozyme 2NPZ 19!C:45!D G:C WC [cWW][XIX] 10.67 57.33; 53.12 4.21 5.92 0.45 7.96
HP_ribozyme 2NPZ 20!C:44!D A:C Wb* [cWW][-] 10.93 73.4; 43.88 29.52 3.84 0.16 12.06
HP_ribozyme 2NPZ 21!C:43!D G:A S [tSH][XI] 10.18 92.71; 4.49 88.22 -57.25 0.33 12.89
HP_ribozyme 2NPZ 22!C:41!D A:U rH_1 [tWH][XXIV] 10.41 18.95; 33.52 14.57 170.26 0.39 10.46
HP_ribozyme 2NPZ 23!C:42!D A:U WC [cWW][XX] 9.95 48.75; 64.19 15.44 36.62 2.57 81.66
HP_ribozyme 2NPZ 26!C:36!D A:G WC [cWW][VIII] 12.47 50.48; 49.99 0.48 -21.15 0.5 36.24
HP_ribozyme 2NPZ 27!C:35!D C:G WC [cWW][XIX] 11.21 55.33; 48.75 6.57 -17.98 0.3 27.03
HP_ribozyme 2NPZ 28!C:34!D A:U WC [cWW][XX] 10.44 54.75; 59.4 4.64 -9.01 0.22 12.95
HP_ribozyme 2NPZ 29!C:33!D C:G WC [cWW][XIX] 11.18 52.22; 53.09 0.87 -6.76 0.27 20.96
HP_ribozyme 2NPZ 30!C:32!D G:C WC [cWW][XIX] 10.35 58.32; 55.63 2.69 -4.43 0.2 14.01
HP_ribozyme 2NPZ 31!C:31!D A:U WC [cWW][XX] 10.63 64.48; 53.8 10.68 1.13 0.76 7.83