Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2NUE
BPC Identified: 22
Ambiguities: 0
dsRNA |
2NUE |
1!C:46!C |
G:C |
WC [cWW][XIX] |
10.14 |
50.1; 59.35 |
9.25 |
-7.26 |
0.18 |
11.33 |
dsRNA |
2NUE |
2!C:45!C |
G:C |
WC [cWW][XIX] |
10.6 |
50.41; 57.09 |
6.67 |
-3.78 |
0.14 |
8.02 |
dsRNA |
2NUE |
3!C:44!C |
G:C |
WC [cWW][XIX] |
10.51 |
50.52; 56.38 |
5.86 |
-7.72 |
0.19 |
12.58 |
dsRNA |
2NUE |
4!C:43!C |
A:U |
WC [cWW][XX] |
10.71 |
52.62; 56.19 |
3.56 |
-1.17 |
0.24 |
7.74 |
dsRNA |
2NUE |
5!C:42!C |
C:G |
WC [cWW][XIX] |
10.75 |
53.97; 53.38 |
0.59 |
-6.01 |
0.01 |
7.7 |
dsRNA |
2NUE |
6!C:41!C |
A:U |
WC [cWW][XX] |
10.36 |
55.92; 55.11 |
0.81 |
-0.67 |
0.17 |
7.22 |
dsRNA |
2NUE |
7!C:40!C |
A:U |
WC [cWW][XX] |
10.16 |
53.7; 56.3 |
2.59 |
-5.08 |
0.07 |
8.7 |
dsRNA |
2NUE |
8!C:39!C |
G:C |
WC [cWW][XIX] |
10.37 |
52.21; 57.52 |
5.31 |
-8.44 |
0.04 |
11.85 |
dsRNA |
2NUE |
9!C:38!C |
C:G |
WC [cWW][XIX] |
10.42 |
54.73; 51.57 |
3.16 |
-8.69 |
0.27 |
13.57 |
dsRNA |
2NUE |
10!C:37!C |
G:C |
WC [cWW][XIX] |
10.49 |
51.91; 52.41 |
0.5 |
-9.02 |
0.23 |
13.14 |
dsRNA |
2NUE |
11!C:36!C |
C:G |
WC [cWW][XIX] |
10.51 |
54.43; 53.57 |
0.86 |
-1.31 |
0.09 |
8.18 |
dsRNA |
2NUE |
12!C:35!C |
A:U |
WC [cWW][XX] |
10.47 |
56.19; 52.08 |
4.12 |
-1.98 |
0.33 |
4.26 |
dsRNA |
2NUE |
13!C:34!C |
A:U |
WC [cWW][XX] |
10.5 |
54.81; 52.84 |
1.96 |
-1.55 |
0.23 |
1.39 |
dsRNA |
2NUE |
14!C:33!C |
G:C |
WC [cWW][XIX] |
10.7 |
53.97; 52.57 |
1.4 |
-4.4 |
0.07 |
6.31 |
dsRNA |
2NUE |
15!C:32!C |
G:C |
WC [cWW][XIX] |
10.71 |
51.44; 54.64 |
3.21 |
-8.45 |
0.12 |
11.12 |
dsRNA |
2NUE |
16!C:31!C |
U:G |
Wb [cWW][XXVIII] |
10.17 |
62.39; 46.08 |
16.32 |
-7.38 |
0.17 |
8.38 |
dsRNA |
2NUE |
17!C:30!C |
C:G |
WC [cWW][XIX] |
10.31 |
51.86; 59.35 |
7.49 |
-11.4 |
0.02 |
15.3 |
dsRNA |
2NUE |
18!C:29!C |
A:U |
WC [cWW][XX] |
10.23 |
57.24; 52.45 |
4.79 |
-5.59 |
0.06 |
13.04 |
dsRNA |
2NUE |
19!C:28!C |
U:G |
Wb [cWW][XXVIII] |
10.24 |
71.8; 39.04 |
32.76 |
-8.46 |
0.45 |
12.12 |
dsRNA |
2NUE |
20!C:27!C |
U:A |
WC [cWW][XX] |
10.45 |
60.22; 53.96 |
6.27 |
-3.04 |
0.17 |
8.4 |
dsRNA |
2NUE |
21!C:26!C |
C:G |
Wb [---][-] |
10.15 |
62.97; 45.67 |
17.3 |
1.2 |
0.12 |
2.68 |
dsRNA |
2NUE |
22!C:25!C |
G:A |
S [tSH][XI] |
9.03 |
114.7; 20.52 |
94.18 |
-22.39 |
0.38 |
14.22 |