Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2NUF
BPC Identified: 28
Ambiguities: 0
| dsRNA |
2NUF |
1!C:26!C |
C:G |
WC [cWW][XIX] |
10.81 |
52.15; 54.73 |
2.58 |
-9.91 |
0.08 |
10.13 |
| dsRNA |
2NUF |
2!C:25!C |
A:U |
WC [cWW][XX] |
10.67 |
52.2; 52.44 |
0.24 |
-2.22 |
0.13 |
8.11 |
| dsRNA |
2NUF |
3!C:24!C |
A:U |
WC [cWW][XX] |
10.35 |
55.3; 60.32 |
5.02 |
-4.37 |
0.19 |
6.53 |
| dsRNA |
2NUF |
4!C:23!C |
G:C |
WC [cWW][XIX] |
10.63 |
53.69; 52.9 |
0.79 |
-1.58 |
0.38 |
6.29 |
| dsRNA |
2NUF |
5!C:22!C |
G:C |
WC [cWW][XIX] |
10.76 |
53.3; 50.68 |
2.62 |
-0.12 |
0.15 |
6.38 |
| dsRNA |
2NUF |
6!C:21!C |
U:G |
Wb [cWW][XXVIII] |
10.5 |
66.71; 46.39 |
20.32 |
-3.91 |
0.18 |
6.6 |
| dsRNA |
2NUF |
7!C:20!C |
C:G |
WC [cWW][XIX] |
10.56 |
54.29; 54.22 |
0.08 |
-1.81 |
0.14 |
6.38 |
| dsRNA |
2NUF |
8!C:19!C |
A:U |
WC [cWW][XX] |
10.65 |
56.79; 54.83 |
1.95 |
-7.59 |
0.12 |
12.73 |
| dsRNA |
2NUF |
9!C:18!C |
U:G |
Wb [cWW][XXVIII] |
10.23 |
68.66; 41.7 |
26.95 |
-13.88 |
0.12 |
16.62 |
| dsRNA |
2NUF |
10!C:17!C |
U:A |
WC [cWW][XX] |
10.46 |
55.01; 53.32 |
1.69 |
-5.2 |
0.15 |
10.96 |
| dsRNA |
2NUF |
11!C:16!C |
C:G |
WC [cWW][XIX] |
10.48 |
55.6; 54.7 |
0.9 |
8.16 |
0.1 |
8.14 |
| dsRNA |
2NUF |
12!C:15!C |
G:A |
S [tSH][XI] |
9.18 |
95.56; 8.37 |
87.19 |
-77.87 |
0.48 |
26.79 |
| dsRNA |
2NUF |
12!C:14!C |
G:A |
S(sb:O2*-N7) [---][-] |
7.75 |
89.18; 26.14 |
63.04 |
-169.28 |
2.08 |
28.37 |
| dsRNA |
2NUF |
27!C:28!D |
C:G |
WC [cWW][XIX] |
10.63 |
53.96; 55.94 |
1.97 |
-9.32 |
0.1 |
13.33 |
| dsRNA |
2NUF |
28!C:27!D |
G:C |
WC [cWW][XIX] |
10.61 |
55.87; 51.93 |
3.93 |
-11.46 |
0.07 |
12.09 |
| dsRNA |
2NUF |
1!D:26!D |
C:G |
WC [cWW][XIX] |
10.79 |
53.18; 54.61 |
1.43 |
-9.4 |
0.21 |
9.22 |
| dsRNA |
2NUF |
2!D:25!D |
A:U |
WC [cWW][XX] |
10.75 |
52.22; 53.91 |
1.69 |
-4.15 |
0.16 |
8.39 |
| dsRNA |
2NUF |
3!D:24!D |
A:U |
WC [cWW][XX] |
10.43 |
55.04; 58.9 |
3.86 |
-6.72 |
0.21 |
10.77 |
| dsRNA |
2NUF |
4!D:23!D |
G:C |
WC [cWW][XIX] |
10.68 |
54.3; 53.35 |
0.94 |
-0.79 |
0.3 |
6.73 |
| dsRNA |
2NUF |
5!D:22!D |
G:C |
WC [cWW][XIX] |
10.83 |
52.83; 50.89 |
1.93 |
1.01 |
0.29 |
4.26 |
| dsRNA |
2NUF |
6!D:21!D |
U:G |
Wb [cWW][XXVIII] |
10.51 |
65.84; 45.98 |
19.86 |
-3.44 |
0.06 |
4.67 |
| dsRNA |
2NUF |
7!D:20!D |
C:G |
WC [cWW][XIX] |
10.57 |
53.45; 53.5 |
0.06 |
-1.02 |
0.16 |
9.92 |
| dsRNA |
2NUF |
8!D:19!D |
A:U |
WC [cWW][XX] |
10.55 |
57.43; 54.75 |
2.69 |
-5.68 |
0.14 |
8.15 |
| dsRNA |
2NUF |
9!D:18!D |
U:G |
Wb [cWW][XXVIII] |
10.22 |
68.76; 40.97 |
27.8 |
-13.13 |
0.05 |
13.2 |
| dsRNA |
2NUF |
10!D:17!D |
U:A |
WC [cWW][XX] |
10.43 |
56.49; 53.44 |
3.05 |
-2.35 |
0.03 |
6.94 |
| dsRNA |
2NUF |
11!D:16!D |
C:G |
WC [cWW][XIX] |
10.5 |
58.45; 54.41 |
4.04 |
11.07 |
0.1 |
10.33 |
| dsRNA |
2NUF |
12!D:15!D |
G:A |
S [tSH][XI] |
8.94 |
99.58; 11.62 |
87.96 |
-81.2 |
0.19 |
26.23 |
| dsRNA |
2NUF |
12!D:14!D |
G:A |
S(sb:O2*-N7) [---][-] |
7.52 |
92.19; 28.12 |
64.08 |
-170.85 |
1.77 |
32.54 |