Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2OEU
BPC Identified: 29
Ambiguities: 0
| Ribozyme |
2OEU |
1!A:20!B |
G:C |
WC [cWW][XIX] |
10.67 |
53.12; 57.09 |
3.97 |
-2.29 |
0.18 |
10.11 |
| Ribozyme |
2OEU |
2!A:19!B |
G:C |
WC [cWW][XIX] |
10.71 |
51.54; 54.23 |
2.69 |
-7.58 |
0.44 |
15.65 |
| Ribozyme |
2OEU |
3!A:18!B |
A:U |
WC [cWW][XX] |
10.59 |
55.07; 53.44 |
1.63 |
-7.29 |
0.23 |
11.14 |
| Ribozyme |
2OEU |
4!A:17!B |
U:A |
sWC [---][-] |
11.04 |
81.4; 30.82 |
50.59 |
-0.91 |
0.01 |
13.23 |
| Ribozyme |
2OEU |
4!A:15!B |
U:C |
WC_mo [cWW][XVIII] |
11.86 |
31.02; 40.59 |
9.57 |
10.54 |
0.48 |
9.47 |
| Ribozyme |
2OEU |
5!A:14!B |
G:C |
WC [cWW][XIX] |
10.76 |
51.9; 53.75 |
1.85 |
-13.45 |
0.06 |
15.08 |
| Ribozyme |
2OEU |
6!A:28!A |
U:A |
rH_1 [tWH][XXIV] |
9.64 |
33.41; 18.65 |
14.75 |
149.43 |
0.03 |
12.81 |
| Ribozyme |
2OEU |
8!A:26!A |
C:C |
rWC [tWW][XV] |
9.56 |
28.77; 34.71 |
5.95 |
172.08 |
0.12 |
8.19 |
| Ribozyme |
2OEU |
9!A:12!B |
U:A |
WC [cWW][XX] |
10.61 |
53.88; 55.45 |
1.57 |
-9.53 |
0.16 |
12.8 |
| Ribozyme |
2OEU |
10!A:11!B |
A:U |
WC [cWW][XX] |
10.24 |
57.33; 57.87 |
0.55 |
-14.29 |
0.57 |
23.22 |
| Ribozyme |
2OEU |
11!A:10!B |
C:G |
WC [cWW][XIX] |
10.44 |
57.63; 55.61 |
2.02 |
-14.96 |
0.39 |
19.67 |
| Ribozyme |
2OEU |
12!A:9!B |
C:G |
WC [cWW][XIX] |
10.6 |
55.15; 53.18 |
1.97 |
-8.22 |
0.2 |
10.36 |
| Ribozyme |
2OEU |
13!A:8!B |
A:U |
WC [cWW][XX] |
10.52 |
56.62; 56.51 |
0.1 |
-10.32 |
0.27 |
14.34 |
| Ribozyme |
2OEU |
14!A:7!B |
G:C |
WC [cWW][XIX] |
10.67 |
53.64; 55.4 |
1.76 |
-11.51 |
0.07 |
15.44 |
| Ribozyme |
2OEU |
15!A:20!A |
C:G |
WC [cWW][XIX] |
10.74 |
52.69; 53.7 |
1.01 |
-2.44 |
0.23 |
9.09 |
| Ribozyme |
2OEU |
16!A:18!A |
U:A |
S(sb:O2*-N7) [---][-] |
6.72 |
80.07; 37.32 |
42.76 |
-169.56 |
0.6 |
33.56 |
| Ribozyme |
2OEU |
17!A:39!A |
G:A |
pfS(sb:O2*-N3) [---][-] |
5.68 |
137.94; 94.11 |
43.84 |
-56.99 |
1.99 |
49.03 |
| Ribozyme |
2OEU |
21!A:36!A |
A:G |
S [tSH][XI] |
9.53 |
6.78; 96.53 |
89.75 |
-56.94 |
0.77 |
16.49 |
| Ribozyme |
2OEU |
22!A:35!A |
G:C |
WC [cWW][XIX] |
10.58 |
55.05; 55.97 |
0.92 |
-11.83 |
0.07 |
18.21 |
| Ribozyme |
2OEU |
23!A:34!A |
U:A |
WC [cWW][XX] |
10.7 |
53.37; 54.29 |
0.92 |
-8.8 |
0.04 |
10.75 |
| Ribozyme |
2OEU |
24!A:33!A |
C:G |
WC [cWW][XIX] |
10.59 |
54.61; 49.7 |
4.92 |
-7.94 |
0.2 |
9.3 |
| Ribozyme |
2OEU |
25!A:32!A |
C:G |
WC [cWW][XIX] |
10.7 |
53.13; 53.14 |
0.01 |
-8.82 |
0.02 |
9.6 |
| Ribozyme |
2OEU |
31!A:13!B |
A:U |
rH_1 [tWH][XXIV] |
9.53 |
18.5; 34.91 |
16.41 |
-154.96 |
0.07 |
12.64 |
| Ribozyme |
2OEU |
37!A:6!B |
A:C |
rH_2_Mo [---][-] |
11.3 |
3.88; 53.36 |
49.48 |
-140.95 |
0.61 |
19.56 |
| Ribozyme |
2OEU |
39!A:5!B |
A:U |
WC [cWW][XX] |
10.5 |
55.37; 56.56 |
1.19 |
-7.98 |
0.07 |
11.09 |
| Ribozyme |
2OEU |
40!A:4!B |
C:G |
WC [cWW][XIX] |
10.65 |
52.35; 53.34 |
0.99 |
-12.17 |
0.52 |
26.55 |
| Ribozyme |
2OEU |
41!A:3!B |
G:C |
WC [cWW][XIX] |
10.6 |
54.46; 56.01 |
1.56 |
-11.23 |
0.29 |
19.36 |
| Ribozyme |
2OEU |
42!A:2!B |
C:G |
WC [cWW][XIX] |
10.59 |
56.89; 54.54 |
2.35 |
-12.23 |
0.35 |
16.73 |
| Ribozyme |
2OEU |
43!A:1!B |
C:G |
WC [cWW][XIX] |
10.64 |
52.91; 51.03 |
1.88 |
-1.2 |
0.07 |
6.27 |