Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2OJ0
BPC Identified: 20
Ambiguities: 0
vRNA |
2OJ0 |
1!A:23!B |
C:G |
WC [cWW][XIX] |
10.61 |
47.03; 56.42 |
9.38 |
-14.6 |
0.06 |
16.77 |
vRNA |
2OJ0 |
2!A:22!B |
U:A |
WC [cWW][XX] |
10.39 |
55.84; 54.05 |
1.79 |
-11.57 |
0.18 |
16.63 |
vRNA |
2OJ0 |
3!A:21!B |
U:A |
WC [cWW][XX] |
10.59 |
54.58; 55.38 |
0.79 |
-5.66 |
0.05 |
8.01 |
vRNA |
2OJ0 |
4!A:20!B |
G:C |
WC [cWW][XIX] |
10.53 |
53.99; 57.58 |
3.59 |
-4.39 |
0.03 |
8.28 |
vRNA |
2OJ0 |
5!A:19!B |
C:G |
WC [cWW][XIX] |
10.84 |
56.4; 50.07 |
6.33 |
-6.9 |
0.12 |
14.74 |
vRNA |
2OJ0 |
6!A:18!B |
U:G |
Wb [cWW][XXVIII] |
10.4 |
64.09; 46.89 |
17.21 |
-6.77 |
0.41 |
13.23 |
vRNA |
2OJ0 |
7!A:17!B |
G:C |
WC [cWW][XIX] |
10.36 |
55.25; 56.97 |
1.72 |
12.47 |
0.27 |
17.46 |
vRNA |
2OJ0 |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.8 |
49.7; 54.08 |
4.37 |
-5.99 |
0.2 |
13.98 |
vRNA |
2OJ0 |
11!A:14!B |
C:G |
WC [cWW][XIX] |
10.51 |
60.32; 55.67 |
4.65 |
-0.64 |
0.0 |
13.1 |
vRNA |
2OJ0 |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.73 |
52.13; 55.93 |
3.8 |
7.42 |
0.06 |
4.04 |
vRNA |
2OJ0 |
13!A:12!B |
C:G |
WC [cWW][XIX] |
10.61 |
57.32; 56.33 |
0.99 |
0.44 |
0.12 |
4.81 |
vRNA |
2OJ0 |
14!A:11!B |
G:C |
WC [cWW][XIX] |
10.51 |
54.85; 55.04 |
0.19 |
3.17 |
0.16 |
8.67 |
vRNA |
2OJ0 |
15!A:10!B |
C:G |
WC [cWW][XIX] |
10.4 |
59.1; 53.59 |
5.51 |
6.92 |
0.25 |
5.78 |
vRNA |
2OJ0 |
17!A:7!B |
C:G |
WC [cWW][XIX] |
10.4 |
58.86; 50.95 |
7.92 |
12.35 |
0.3 |
13.47 |
vRNA |
2OJ0 |
18!A:6!B |
G:U |
Wb [cWW][XXVIII] |
10.31 |
44.82; 68.23 |
23.4 |
-0.1 |
0.18 |
7.13 |
vRNA |
2OJ0 |
19!A:5!B |
G:C |
WC [cWW][XIX] |
10.46 |
52.94; 59.02 |
6.09 |
-8.79 |
0.27 |
16.52 |
vRNA |
2OJ0 |
20!A:4!B |
C:G |
WC [cWW][XIX] |
10.71 |
54.43; 51.46 |
2.96 |
-6.44 |
0.2 |
11.53 |
vRNA |
2OJ0 |
21!A:3!B |
A:U |
WC [cWW][XX] |
10.34 |
60.08; 57.08 |
3.0 |
-10.11 |
0.15 |
12.9 |
vRNA |
2OJ0 |
22!A:2!B |
A:U |
WC [cWW][XX] |
10.6 |
56.37; 48.42 |
7.95 |
-9.0 |
0.01 |
13.76 |
vRNA |
2OJ0 |
23!A:1!B |
G:C |
WC [cWW][XIX] |
10.83 |
50.63; 48.05 |
2.58 |
-10.97 |
0.38 |
24.16 |