Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2OJ3
BPC Identified: 32
Ambiguities: 0
| HDV_ribozyme |
2OJ3 |
101!B:163!B |
G:U |
S(bp:N3-O2P)_2 [---][-] |
9.56 |
66.59; 59.33 |
7.26 |
-177.61 |
1.54 |
43.31 |
| HDV_ribozyme |
2OJ3 |
101!B:137!B |
G:U |
sWb [---][-] |
11.12 |
27.06; 77.37 |
50.32 |
0.61 |
0.24 |
12.18 |
| HDV_ribozyme |
2OJ3 |
102!B:136!B |
G:C |
Wb* [---][-] |
10.48 |
68.73; 56.78 |
11.95 |
3.26 |
0.45 |
4.25 |
| HDV_ribozyme |
2OJ3 |
103!B:135!B |
C:G |
WC_Mo [cWW][XIX] |
10.43 |
65.28; 62.2 |
3.08 |
4.68 |
0.09 |
10.17 |
| HDV_ribozyme |
2OJ3 |
104!B:134!B |
C:G |
WC [cWW][XIX] |
10.94 |
56.37; 53.65 |
2.72 |
16.01 |
0.25 |
13.43 |
| HDV_ribozyme |
2OJ3 |
105!B:133!B |
G:C |
WC [cWW][XIX] |
10.15 |
55.23; 66.15 |
10.91 |
10.39 |
0.09 |
9.07 |
| HDV_ribozyme |
2OJ3 |
106!B:132!B |
G:C |
WC [cWW][XIX] |
9.85 |
56.98; 68.0 |
11.02 |
0.81 |
0.36 |
7.02 |
| HDV_ribozyme |
2OJ3 |
107!B:131!B |
C:G |
Wb [---][-] |
10.31 |
66.11; 49.93 |
16.18 |
2.11 |
0.02 |
2.57 |
| HDV_ribozyme |
2OJ3 |
111!B:172!B |
G:C |
WC [cWW][XIX] |
10.46 |
54.79; 53.73 |
1.05 |
-4.65 |
0.18 |
19.6 |
| HDV_ribozyme |
2OJ3 |
112!B:171!B |
U:A |
WC [cWW][XX] |
10.48 |
56.01; 53.19 |
2.82 |
-3.89 |
0.04 |
11.08 |
| HDV_ribozyme |
2OJ3 |
113!B:170!B |
C:G |
WC [cWW][XIX] |
10.76 |
59.07; 51.65 |
7.42 |
-5.4 |
0.2 |
11.3 |
| HDV_ribozyme |
2OJ3 |
114!B:169!B |
C:G |
WC [cWW][XIX] |
10.85 |
53.49; 50.54 |
2.95 |
-0.05 |
0.38 |
10.18 |
| HDV_ribozyme |
2OJ3 |
115!B:168!B |
C:G |
WC [cWW][XIX] |
10.52 |
53.48; 51.58 |
1.9 |
-4.8 |
0.04 |
7.49 |
| HDV_ribozyme |
2OJ3 |
116!B:167!B |
A:U |
WC [cWW][XX] |
9.71 |
64.29; 65.88 |
1.59 |
-18.6 |
0.05 |
18.28 |
| HDV_ribozyme |
2OJ3 |
117!B:130!B |
G:C |
WC [cWW][XIX] |
10.35 |
52.86; 57.21 |
4.34 |
-12.98 |
0.08 |
16.37 |
| HDV_ribozyme |
2OJ3 |
118!B:166!B |
C:A |
rpS(bs:O2-O2*) [cSS][-] |
5.34 |
107.43; 151.25 |
43.82 |
-37.86 |
1.77 |
8.86 |
| HDV_ribozyme |
2OJ3 |
118!B:129!B |
C:G |
WC [cWW][XIX] |
10.33 |
57.66; 52.03 |
5.64 |
-19.16 |
0.03 |
23.74 |
| HDV_ribozyme |
2OJ3 |
119!B:165!B |
C:A |
rpS(sb:O2*-N3) [cSS][-] |
5.59 |
152.57; 98.97 |
53.6 |
-50.14 |
0.07 |
21.81 |
| HDV_ribozyme |
2OJ3 |
119!B:128!B |
C:G |
WC [cWW][XIX] |
10.5 |
53.21; 52.39 |
0.81 |
-12.97 |
0.27 |
16.06 |
| HDV_ribozyme |
2OJ3 |
120!B:163!B |
U:U |
pS [cSH][-] |
6.87 |
138.95; 38.0 |
100.95 |
66.53 |
2.51 |
42.5 |
| HDV_ribozyme |
2OJ3 |
120!B:125!B |
U:G |
rH_2 [---][-] |
11.52 |
25.04; 9.18 |
15.86 |
46.25 |
0.97 |
3.65 |
| HDV_ribozyme |
2OJ3 |
121!B:142!B |
C:A |
pfS [cSW][-] |
9.08 |
123.69; 34.46 |
89.23 |
-12.47 |
0.22 |
35.65 |
| HDV_ribozyme |
2OJ3 |
121!B:139!B |
C:G |
WC [cWW][XIX] |
10.59 |
53.31; 52.24 |
1.07 |
-17.6 |
0.41 |
23.57 |
| HDV_ribozyme |
2OJ3 |
122!B:138!B |
C:G |
WC [cWW][XIX] |
10.5 |
55.01; 54.39 |
0.62 |
-11.02 |
0.0 |
12.5 |
| HDV_ribozyme |
2OJ3 |
129!B:166!B |
G:A |
rS [tSS][-] |
8.13 |
82.78; 56.2 |
26.58 |
163.32 |
0.61 |
31.76 |
| HDV_ribozyme |
2OJ3 |
140!B:142!B |
G:A |
pS_1 [cSH][-] |
7.78 |
137.25; 27.1 |
110.15 |
-24.11 |
0.07 |
46.97 |
| HDV_ribozyme |
2OJ3 |
141!B:161!B |
C:G |
rH_1 [tWH][-] |
11.16 |
21.32; 4.47 |
16.85 |
177.42 |
0.22 |
5.9 |
| HDV_ribozyme |
2OJ3 |
143!B:162!B |
A:G |
WC [cWW][VIII] |
12.31 |
49.42; 48.99 |
0.43 |
-17.8 |
0.54 |
24.39 |
| HDV_ribozyme |
2OJ3 |
144!B:161!B |
C:G |
WC [cWW][XIX] |
10.66 |
53.82; 56.98 |
3.16 |
-11.11 |
0.48 |
19.28 |
| HDV_ribozyme |
2OJ3 |
145!B:160!B |
A:U |
WC [cWW][XX] |
10.2 |
58.01; 56.13 |
1.88 |
-9.82 |
0.04 |
15.53 |
| HDV_ribozyme |
2OJ3 |
146!B:159!B |
C:G |
WC [cWW][XIX] |
10.26 |
57.16; 54.8 |
2.36 |
-4.68 |
0.07 |
13.48 |
| HDV_ribozyme |
2OJ3 |
147!B:158!B |
C:G |
WC [cWW][XIX] |
10.7 |
54.21; 52.17 |
2.04 |
2.78 |
0.03 |
3.17 |