Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2P7D BPC Identified: 29 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 2P7D 2!A:13!B C:G WC [cWW][XIX] 10.39 55.69; 57.23 1.54 -8.6 0.04 19.37
HP_ribozyme 2P7D 3!A:12!B C:G WC [cWW][XIX] 10.52 55.99; 53.44 2.55 -8.21 0.02 9.72
HP_ribozyme 2P7D 4!A:11!B C:G WC [cWW][XIX] 10.48 59.18; 52.48 6.7 3.25 0.02 3.85
HP_ribozyme 2P7D 5!A:9!B A:A S [tSH][-] 10.09 82.77; 4.15 78.62 -93.22 0.18 13.93
HP_ribozyme 2P7D 2!B:13!P C:G WC [cWW][XIX] 10.66 55.92; 60.19 4.27 -7.11 0.07 9.66
HP_ribozyme 2P7D 3!B:12!P G:C WC [cWW][XIX] 10.69 53.03; 57.45 4.42 -7.53 0.08 10.18
HP_ribozyme 2P7D 4!B:11!P G:C WC [cWW][XIX] 10.81 55.68; 58.7 3.02 -4.99 0.06 10.69
HP_ribozyme 2P7D 5!B:10!P U:A WC [cWW][XX] 10.68 52.72; 55.65 2.93 -12.27 0.1 17.35
HP_ribozyme 2P7D 6!B:9!P G:C WC [cWW][XIX] 10.81 57.99; 54.59 3.4 -9.69 0.51 24.64
HP_ribozyme 2P7D 7!B:8!P A:C Wb* [cWW][-] 11.17 67.21; 46.05 21.16 -4.6 0.0 28.66
HP_ribozyme 2P7D 10!B:25!C A:C rpS(sb:O2*-N3) [cSS][-] 5.4 93.68; 148.64 54.96 -68.48 0.64 46.35
HP_ribozyme 2P7D 11!B:24!C G:A rpS(sb:O2*-N3) [---][-] 5.33 150.26; 91.24 59.02 -67.59 1.15 48.0
HP_ribozyme 2P7D 15!C:49!D G:C WC [cWW][XIX] 10.69 53.2; 56.17 2.97 -9.72 0.14 14.2
HP_ribozyme 2P7D 16!C:48!D G:C WC [cWW][XIX] 10.68 49.14; 56.64 7.51 -13.03 0.1 16.51
HP_ribozyme 2P7D 17!C:47!D C:G WC [cWW][XIX] 10.79 53.22; 56.54 3.33 -9.39 0.33 15.24
HP_ribozyme 2P7D 18!C:46!D A:U WC [cWW][XX] 10.48 57.48; 58.91 1.43 -4.64 0.22 11.17
HP_ribozyme 2P7D 19!C:45!D G:C WC [cWW][XIX] 10.35 55.58; 59.29 3.72 3.24 0.06 9.35
HP_ribozyme 2P7D 20!C:44!D A:C Wb* [cWW][-] 10.35 75.5; 48.83 26.67 -0.04 0.24 16.28
HP_ribozyme 2P7D 21!C:43!D G:A S [tSH][XI] 9.53 96.64; 2.05 94.59 50.99 0.08 7.65
HP_ribozyme 2P7D 22!C:41!D A:U rH_1 [tWH][XXIV] 9.81 21.08; 30.2 9.12 -169.05 0.48 13.17
HP_ribozyme 2P7D 23!C:40!D A:A rH [tWH][V] 12.56 14.01; 26.34 12.33 174.44 0.69 21.89
HP_ribozyme 2P7D 24!C:38!D A:A rpS* [---][-] 11.65 2.1; 51.1 49.0 131.55 0.58 18.78
HP_ribozyme 2P7D 25!C:6!P C:G WC [cWW][XIX] 10.64 53.05; 52.55 0.5 -16.25 0.66 21.28
HP_ribozyme 2P7D 26!C:36!D A:G WC [cWW][VIII] 12.65 46.35; 45.12 1.24 -9.21 0.21 21.4
HP_ribozyme 2P7D 27!C:35!D C:G WC [cWW][XIX] 10.63 52.74; 53.85 1.1 -19.23 0.36 26.0
HP_ribozyme 2P7D 28!C:34!D A:U WC [cWW][XX] 10.37 55.62; 55.1 0.52 -18.51 0.1 22.88
HP_ribozyme 2P7D 29!C:33!D C:G WC [cWW][XIX] 10.49 56.34; 54.23 2.11 -12.21 0.28 16.04
HP_ribozyme 2P7D 30!C:32!D G:C WC [cWW][XIX] 10.81 53.32; 53.4 0.08 -12.85 0.44 17.67
HP_ribozyme 2P7D 31!C:31!D A:U WC [cWW][XX] 10.57 59.02; 51.82 7.2 -4.45 0.09 8.98