Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PJP
BPC Identified: 11
Ambiguities: 0
| mRNA |
2PJP |
12!B:34!B |
G:C |
WC [cWW][XIX] |
10.53 |
51.02; 51.68 |
0.66 |
-5.92 |
0.31 |
10.99 |
| mRNA |
2PJP |
13!B:33!B |
G:C |
WC [cWW][XIX] |
10.56 |
55.38; 57.82 |
2.43 |
-10.9 |
0.07 |
13.95 |
| mRNA |
2PJP |
14!B:32!B |
C:G |
WC [cWW][XIX] |
10.62 |
59.19; 55.3 |
3.88 |
-10.4 |
0.26 |
13.86 |
| mRNA |
2PJP |
15!B:31!B |
G:C |
WC [cWW][XIX] |
10.58 |
56.15; 52.73 |
3.42 |
-14.26 |
0.13 |
20.12 |
| mRNA |
2PJP |
16!B:30!B |
G:C |
WC [cWW][XIX] |
10.67 |
52.13; 54.44 |
2.31 |
-8.04 |
0.05 |
11.12 |
| mRNA |
2PJP |
17!B:18!B |
U:U |
rpS(ps:O1P-O2*) [---][-] |
9.33 |
110.51; 88.98 |
21.53 |
-179.65 |
0.04 |
16.3 |
| mRNA |
2PJP |
18!B:29!B |
U:A |
WC [cWW][XX] |
10.42 |
57.74; 57.25 |
0.49 |
-7.92 |
0.18 |
8.11 |
| mRNA |
2PJP |
19!B:28!B |
G:C |
WC [cWW][XIX] |
10.69 |
49.23; 54.5 |
5.27 |
-11.86 |
0.07 |
18.29 |
| mRNA |
2PJP |
20!B:27!B |
C:G |
WC [cWW][XIX] |
10.59 |
56.21; 55.78 |
0.43 |
-9.34 |
0.08 |
11.64 |
| mRNA |
2PJP |
21!B:26!B |
A:U |
WC [cWW][XX] |
10.81 |
50.59; 51.1 |
0.51 |
-13.36 |
0.17 |
12.74 |
| mRNA |
2PJP |
22!B:25!B |
G:C |
WC [cWW][XIX] |
10.65 |
53.63; 57.33 |
3.7 |
7.4 |
0.22 |
10.35 |