Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2PN4 BPC Identified: 39 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
IRES_RNA 2PN4 47!A:116!B C:G WC [cWW][XIX] 10.62 52.88; 55.06 2.19 -3.94 0.2 9.95
IRES_RNA 2PN4 48!A:115!B G:C WC [cWW][XIX] 10.54 51.87; 53.74 1.86 -8.64 0.03 9.59
IRES_RNA 2PN4 49!A:114!B G:C WC [cWW][XIX] 10.55 53.66; 53.66 0.0 -7.27 0.03 12.9
IRES_RNA 2PN4 50!A:113!B A:U WC [cWW][XX] 10.56 53.89; 51.68 2.21 -4.8 0.01 12.67
IRES_RNA 2PN4 51!A:112!B G:C WC [cWW][XIX] 10.55 56.04; 54.57 1.48 -2.55 0.02 7.53
IRES_RNA 2PN4 52!A:111!B G:C WC [cWW][XIX] 10.7 54.94; 53.72 1.21 -0.27 0.18 8.25
IRES_RNA 2PN4 58!A:112!D C:C rS(ss:O2*-O2*)_1 [---][-] 5.77 141.62; 147.26 5.64 -96.76 0.35 26.07
IRES_RNA 2PN4 58!A:110!B C:G WC [cWW][XIX] 10.68 52.11; 53.53 1.41 -10.89 0.01 20.43
IRES_RNA 2PN4 59!A:109!B U:A WC [cWW][XX] 10.65 51.11; 51.69 0.58 -13.75 0.06 17.7
IRES_RNA 2PN4 60!A:108!B G:C WC [cWW][XIX] 10.69 52.62; 54.47 1.85 -13.88 0.04 14.39
IRES_RNA 2PN4 61!A:107!B U:G Wb [cWW][XXVIII] 10.45 64.58; 41.95 22.63 -11.21 0.07 12.59
IRES_RNA 2PN4 62!A:105!B C:G WC [cWW][XIX] 10.83 50.14; 52.51 2.37 -5.81 0.1 12.58
IRES_RNA 2PN4 63!A:104!B U:C WC [cWW][XVIII] 8.38 60.45; 61.48 1.03 -17.2 0.22 29.19
IRES_RNA 2PN4 64!A:103!B U:U Wb [cWW][XVI] 8.38 45.76; 79.7 33.94 -17.02 0.27 18.5
IRES_RNA 2PN4 65!A:102!B C:G WC [cWW][XIX] 10.42 60.77; 48.42 12.35 -17.2 0.48 20.6
IRES_RNA 2PN4 66!A:101!B A:U WC [cWW][XX] 10.69 52.88; 49.98 2.89 -14.27 0.29 14.06
IRES_RNA 2PN4 67!A:100!B C:G WC [cWW][XIX] 10.83 54.03; 55.99 1.96 -14.56 0.15 17.61
IRES_RNA 2PN4 68!A:99!B G:C WC [cWW][XIX] 10.79 52.44; 50.15 2.29 -17.43 0.14 23.89
IRES_RNA 2PN4 69!A:98!B C:G WC [cWW][XIX] 10.97 55.32; 48.31 7.02 -17.06 0.02 23.2
IRES_RNA 2PN4 112!B:58!C C:C rS(ss:O2*-O2*)_1 [---][-] 5.81 145.98; 142.83 3.16 -92.57 0.59 26.84
IRES_RNA 2PN4 47!C:116!D C:G WC [cWW][XIX] 10.62 55.1; 53.11 1.99 -6.28 0.16 14.62
IRES_RNA 2PN4 48!C:115!D G:C WC [cWW][XIX] 10.72 51.12; 53.44 2.32 -7.96 0.07 13.28
IRES_RNA 2PN4 49!C:114!D G:C WC [cWW][XIX] 10.58 56.24; 54.44 1.8 -7.74 0.07 13.8
IRES_RNA 2PN4 50!C:113!D A:U WC [cWW][XX] 10.57 52.58; 52.23 0.36 -6.06 0.16 13.6
IRES_RNA 2PN4 51!C:112!D G:C WC [cWW][XIX] 10.61 54.95; 54.42 0.53 -4.55 0.08 11.23
IRES_RNA 2PN4 52!C:111!D G:C WC [cWW][XIX] 10.71 53.53; 53.21 0.33 0.6 0.26 8.81
IRES_RNA 2PN4 55!C:57!C C:A S(sb:O2*-N6) [---][-] 8.19 148.38; 21.54 126.84 -166.19 1.04 81.71
IRES_RNA 2PN4 58!C:110!D C:G WC [cWW][XIX] 10.77 51.85; 52.99 1.15 -13.21 0.13 22.62
IRES_RNA 2PN4 59!C:109!D U:A WC [cWW][XX] 10.59 51.83; 51.98 0.14 -16.55 0.02 16.17
IRES_RNA 2PN4 60!C:108!D G:C WC [cWW][XIX] 10.69 52.73; 56.2 3.47 -13.18 0.38 19.32
IRES_RNA 2PN4 61!C:107!D U:G Wb [cWW][XXVIII] 10.46 63.75; 39.58 24.17 -14.43 0.16 16.22
IRES_RNA 2PN4 62!C:105!D C:G WC [cWW][XIX] 10.83 49.35; 55.55 6.2 -4.7 0.04 12.82
IRES_RNA 2PN4 63!C:104!D U:C WC [cWW][XVIII] 8.42 59.21; 58.55 0.66 -15.55 0.13 28.42
IRES_RNA 2PN4 64!C:103!D U:U Wb [cWW][XVI] 8.42 43.14; 75.31 32.17 -18.53 0.03 19.52
IRES_RNA 2PN4 65!C:102!D C:G WC [cWW][XIX] 10.4 59.84; 51.57 8.27 -13.41 0.0 18.95
IRES_RNA 2PN4 66!C:101!D A:U WC [cWW][XX] 10.46 54.98; 52.96 2.02 -13.48 0.37 14.07
IRES_RNA 2PN4 67!C:100!D C:G WC [cWW][XIX] 10.86 53.2; 58.2 5.0 -16.76 0.31 18.63
IRES_RNA 2PN4 68!C:99!D G:C WC [cWW][XIX] 10.85 57.12; 49.83 7.29 -19.3 0.34 22.27
IRES_RNA 2PN4 69!C:98!D C:G WC [cWW][XIX] 10.73 58.76; 47.89 10.87 -20.11 0.14 25.37