Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXB
BPC Identified: 24
Ambiguities: 0
| SRP_RNA |
2PXB |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.8 |
55.25; 56.53 |
1.29 |
-5.63 |
0.2 |
6.45 |
| SRP_RNA |
2PXB |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.42 |
51.97; 56.67 |
4.7 |
-11.86 |
0.13 |
16.38 |
| SRP_RNA |
2PXB |
132!B:176!B |
U:G |
Wb [cWW][XXVIII] |
10.32 |
70.23; 42.97 |
27.26 |
-7.22 |
0.06 |
13.9 |
| SRP_RNA |
2PXB |
133!B:175!B |
G:U |
WC [---][-] |
10.35 |
55.01; 55.37 |
0.36 |
-4.73 |
0.19 |
15.02 |
| SRP_RNA |
2PXB |
134!B:174!B |
C:G |
WC [cWW][XIX] |
10.43 |
55.57; 54.55 |
1.02 |
-4.09 |
0.09 |
7.45 |
| SRP_RNA |
2PXB |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.75 |
53.19; 53.86 |
0.67 |
-6.88 |
0.1 |
11.69 |
| SRP_RNA |
2PXB |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.67 |
53.12; 54.54 |
1.41 |
-7.25 |
0.07 |
15.21 |
| SRP_RNA |
2PXB |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.2 |
72.4; 43.41 |
28.99 |
-15.86 |
0.46 |
16.64 |
| SRP_RNA |
2PXB |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.07 |
69.63; 42.97 |
26.66 |
-11.23 |
0.1 |
19.09 |
| SRP_RNA |
2PXB |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.5 |
55.49; 53.12 |
2.37 |
-1.86 |
0.03 |
0.84 |
| SRP_RNA |
2PXB |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.5 |
159.05; 117.95 |
41.1 |
94.06 |
0.77 |
61.86 |
| SRP_RNA |
2PXB |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.54 |
50.65; 54.62 |
3.97 |
-2.75 |
0.34 |
10.24 |
| SRP_RNA |
2PXB |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.42 |
53.82; 55.03 |
1.21 |
-7.71 |
0.63 |
17.48 |
| SRP_RNA |
2PXB |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.35 |
66.14; 36.66 |
29.48 |
-5.65 |
0.08 |
10.67 |
| SRP_RNA |
2PXB |
147!B:164!B |
C:A |
S [tSH][-] |
9.8 |
83.88; 3.91 |
79.97 |
-60.29 |
0.74 |
5.32 |
| SRP_RNA |
2PXB |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
10.92 |
8.69; 22.74 |
14.05 |
-172.15 |
0.35 |
18.42 |
| SRP_RNA |
2PXB |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.17 |
40.13; 63.89 |
23.76 |
165.34 |
1.44 |
15.09 |
| SRP_RNA |
2PXB |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.44 |
9.09; 83.34 |
74.26 |
0.39 |
0.11 |
3.12 |
| SRP_RNA |
2PXB |
150!B:161!B |
G:A |
rWb* [---][-] |
12.46 |
47.01; 46.94 |
0.07 |
6.79 |
0.06 |
12.72 |
| SRP_RNA |
2PXB |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.76 |
51.03; 52.84 |
1.81 |
-1.51 |
0.38 |
12.66 |
| SRP_RNA |
2PXB |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.41 |
55.58; 51.65 |
3.94 |
-5.46 |
0.26 |
12.28 |
| SRP_RNA |
2PXB |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.66 |
54.74; 50.01 |
4.72 |
4.8 |
0.15 |
2.01 |
| SRP_RNA |
2PXB |
154!B:157!B |
G:A |
S [tSH][XI] |
9.03 |
97.9; 10.41 |
87.49 |
-91.89 |
0.68 |
11.98 |
| SRP_RNA |
2PXB |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.46 |
91.27; 37.07 |
54.2 |
-168.56 |
2.4 |
26.52 |