Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXD
BPC Identified: 23
Ambiguities: 0
| SRP_RNA |
2PXD |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.58 |
57.5; 46.88 |
10.62 |
-0.86 |
0.32 |
1.88 |
| SRP_RNA |
2PXD |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.29 |
53.3; 52.77 |
0.54 |
-6.65 |
0.15 |
13.61 |
| SRP_RNA |
2PXD |
132!B:176!B |
G:U |
Wb [cWW][XXVIII] |
10.01 |
43.52; 63.95 |
20.42 |
-4.13 |
0.41 |
12.27 |
| SRP_RNA |
2PXD |
133!B:175!B |
G:U |
Wb [cWW][XXVIII] |
10.06 |
46.21; 60.95 |
14.75 |
-7.78 |
0.01 |
10.8 |
| SRP_RNA |
2PXD |
134!B:174!B |
C:G |
WC [cWW][XIX] |
10.27 |
59.08; 52.35 |
6.72 |
-7.17 |
0.11 |
9.32 |
| SRP_RNA |
2PXD |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.57 |
55.34; 51.7 |
3.64 |
-5.66 |
0.11 |
9.38 |
| SRP_RNA |
2PXD |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.76 |
54.29; 54.82 |
0.53 |
-7.53 |
0.27 |
13.22 |
| SRP_RNA |
2PXD |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.09 |
71.24; 41.13 |
30.11 |
-14.82 |
0.28 |
14.09 |
| SRP_RNA |
2PXD |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
9.94 |
67.68; 42.75 |
24.93 |
-12.81 |
0.08 |
18.94 |
| SRP_RNA |
2PXD |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.53 |
53.23; 54.11 |
0.87 |
-0.42 |
0.1 |
1.98 |
| SRP_RNA |
2PXD |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.59 |
158.74; 117.15 |
41.6 |
94.59 |
0.34 |
56.68 |
| SRP_RNA |
2PXD |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.42 |
56.11; 52.55 |
3.56 |
-6.38 |
0.06 |
8.82 |
| SRP_RNA |
2PXD |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.39 |
56.81; 49.93 |
6.88 |
-1.66 |
0.69 |
19.69 |
| SRP_RNA |
2PXD |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.16 |
68.67; 36.15 |
32.51 |
-3.43 |
0.4 |
13.12 |
| SRP_RNA |
2PXD |
147!B:164!B |
C:A |
S [tSH][-] |
9.59 |
86.24; 5.26 |
80.98 |
-56.59 |
0.83 |
7.51 |
| SRP_RNA |
2PXD |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
10.91 |
6.53; 22.47 |
15.94 |
-153.27 |
0.41 |
15.27 |
| SRP_RNA |
2PXD |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.44 |
37.69; 60.33 |
22.65 |
169.94 |
1.35 |
14.58 |
| SRP_RNA |
2PXD |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.96 |
9.26; 77.73 |
68.47 |
-11.19 |
0.25 |
3.45 |
| SRP_RNA |
2PXD |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.61 |
52.56; 52.52 |
0.03 |
1.69 |
0.38 |
10.71 |
| SRP_RNA |
2PXD |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.31 |
57.2; 46.28 |
10.92 |
-5.58 |
0.08 |
6.11 |
| SRP_RNA |
2PXD |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.55 |
54.2; 51.25 |
2.95 |
2.42 |
0.03 |
1.3 |
| SRP_RNA |
2PXD |
154!B:157!B |
G:A |
S [tSH][XI] |
8.95 |
98.22; 10.48 |
87.74 |
-81.31 |
0.9 |
12.67 |
| SRP_RNA |
2PXD |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.53 |
92.66; 38.55 |
54.11 |
-170.92 |
2.48 |
23.35 |