Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXE
BPC Identified: 25
Ambiguities: 0
| SRP_RNA |
2PXE |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.68 |
56.71; 50.82 |
5.88 |
-5.85 |
0.07 |
11.44 |
| SRP_RNA |
2PXE |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.42 |
52.22; 56.42 |
4.21 |
-10.46 |
0.11 |
15.54 |
| SRP_RNA |
2PXE |
132!B:176!B |
G:U |
Wb [cWW][XXVIII] |
10.54 |
42.74; 66.61 |
23.87 |
-3.82 |
0.16 |
9.74 |
| SRP_RNA |
2PXE |
133!B:175!B |
U:G |
Wb [cWW][XXVIII] |
10.18 |
67.2; 43.53 |
23.66 |
-1.75 |
0.12 |
4.98 |
| SRP_RNA |
2PXE |
134!B:174!B |
C:G |
WC [cWW][XIX] |
10.36 |
54.36; 55.25 |
0.89 |
-7.57 |
0.07 |
13.18 |
| SRP_RNA |
2PXE |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.59 |
53.71; 51.81 |
1.9 |
-5.22 |
0.04 |
7.23 |
| SRP_RNA |
2PXE |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.72 |
52.13; 55.32 |
3.19 |
-7.17 |
0.08 |
14.43 |
| SRP_RNA |
2PXE |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.32 |
67.37; 40.64 |
26.72 |
-10.17 |
0.35 |
11.69 |
| SRP_RNA |
2PXE |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.24 |
65.68; 43.17 |
22.51 |
-13.53 |
0.14 |
20.56 |
| SRP_RNA |
2PXE |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.59 |
54.51; 51.13 |
3.38 |
-5.48 |
0.11 |
4.61 |
| SRP_RNA |
2PXE |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.42 |
156.92; 117.38 |
39.54 |
102.79 |
0.44 |
56.58 |
| SRP_RNA |
2PXE |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.62 |
53.93; 54.55 |
0.62 |
-5.01 |
0.49 |
15.81 |
| SRP_RNA |
2PXE |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.52 |
53.47; 55.39 |
1.93 |
-10.46 |
0.87 |
22.31 |
| SRP_RNA |
2PXE |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.52 |
64.1; 36.26 |
27.85 |
-7.81 |
0.06 |
8.69 |
| SRP_RNA |
2PXE |
147!B:164!B |
C:A |
S [tSH][-] |
10.16 |
78.46; 1.3 |
77.16 |
-16.92 |
0.67 |
14.8 |
| SRP_RNA |
2PXE |
147!B:163!B |
C:C |
rH_2 [tWH][-] |
9.73 |
49.86; 21.76 |
28.1 |
133.54 |
0.83 |
30.75 |
| SRP_RNA |
2PXE |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
10.83 |
8.81; 24.75 |
15.94 |
-145.91 |
0.64 |
18.2 |
| SRP_RNA |
2PXE |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.4 |
37.49; 63.48 |
26.0 |
171.16 |
1.2 |
16.2 |
| SRP_RNA |
2PXE |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.72 |
9.84; 82.19 |
72.35 |
-6.75 |
0.0 |
7.91 |
| SRP_RNA |
2PXE |
150!B:161!B |
G:A |
WC [cWW][VIII] |
12.69 |
45.93; 47.25 |
1.32 |
1.74 |
0.28 |
14.4 |
| SRP_RNA |
2PXE |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.89 |
50.91; 51.74 |
0.83 |
-1.46 |
0.54 |
11.98 |
| SRP_RNA |
2PXE |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.26 |
55.04; 54.58 |
0.46 |
-5.07 |
0.14 |
12.01 |
| SRP_RNA |
2PXE |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.45 |
53.64; 55.76 |
2.11 |
3.92 |
0.13 |
6.25 |
| SRP_RNA |
2PXE |
154!B:157!B |
G:A |
S [tSH][XI] |
9.38 |
96.32; 12.57 |
83.75 |
-83.47 |
0.64 |
13.93 |
| SRP_RNA |
2PXE |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.75 |
89.73; 39.57 |
50.17 |
-171.88 |
2.71 |
23.14 |