Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXF
BPC Identified: 22
Ambiguities: 0
| SRP_RNA |
2PXF |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.85 |
54.13; 55.5 |
1.37 |
-2.64 |
0.29 |
4.03 |
| SRP_RNA |
2PXF |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.36 |
53.16; 53.0 |
0.16 |
-5.67 |
0.04 |
10.77 |
| SRP_RNA |
2PXF |
132!B:176!B |
G:U |
Wb [cWW][XXVIII] |
10.15 |
40.01; 72.33 |
32.32 |
-1.08 |
0.11 |
6.57 |
| SRP_RNA |
2PXF |
133!B:175!B |
G:U |
Wb [cWW][XXVIII] |
10.1 |
45.34; 64.02 |
18.69 |
-7.02 |
0.31 |
10.44 |
| SRP_RNA |
2PXF |
134!B:174!B |
G:C |
WC [cWW][XIX] |
10.25 |
55.42; 55.96 |
0.54 |
-6.6 |
0.37 |
13.86 |
| SRP_RNA |
2PXF |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.65 |
52.5; 51.57 |
0.92 |
-8.1 |
0.16 |
12.35 |
| SRP_RNA |
2PXF |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.75 |
54.48; 53.19 |
1.29 |
-8.19 |
0.33 |
14.68 |
| SRP_RNA |
2PXF |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.18 |
70.51; 40.41 |
30.1 |
-16.21 |
0.28 |
14.55 |
| SRP_RNA |
2PXF |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.01 |
70.52; 40.42 |
30.1 |
-14.86 |
0.11 |
19.55 |
| SRP_RNA |
2PXF |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.52 |
53.37; 54.32 |
0.95 |
-6.31 |
0.02 |
5.93 |
| SRP_RNA |
2PXF |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.54 |
157.09; 117.79 |
39.3 |
101.55 |
0.17 |
55.55 |
| SRP_RNA |
2PXF |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.6 |
51.62; 56.28 |
4.66 |
-2.01 |
0.24 |
14.29 |
| SRP_RNA |
2PXF |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.7 |
55.38; 48.47 |
6.91 |
0.5 |
0.49 |
20.97 |
| SRP_RNA |
2PXF |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.32 |
69.44; 35.15 |
34.29 |
-3.99 |
0.19 |
12.63 |
| SRP_RNA |
2PXF |
147!B:164!B |
C:A |
S [tSH][-] |
10.13 |
77.67; 6.97 |
70.7 |
-52.34 |
0.92 |
6.51 |
| SRP_RNA |
2PXF |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
11.02 |
10.07; 24.05 |
13.98 |
-162.87 |
0.63 |
17.9 |
| SRP_RNA |
2PXF |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.39 |
40.87; 66.32 |
25.45 |
169.29 |
0.56 |
18.78 |
| SRP_RNA |
2PXF |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.6 |
12.59; 84.85 |
72.27 |
-7.65 |
0.18 |
2.45 |
| SRP_RNA |
2PXF |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.76 |
48.63; 55.01 |
6.37 |
2.47 |
0.32 |
8.79 |
| SRP_RNA |
2PXF |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.36 |
57.09; 47.75 |
9.34 |
-2.76 |
0.26 |
7.12 |
| SRP_RNA |
2PXF |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.52 |
54.54; 48.2 |
6.34 |
0.62 |
0.05 |
1.78 |
| SRP_RNA |
2PXF |
154!B:157!B |
G:A |
S [tSH][XI] |
8.91 |
96.83; 12.18 |
84.65 |
-90.37 |
0.77 |
15.29 |