Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXK
BPC Identified: 24
Ambiguities: 0
| SRP_RNA |
2PXK |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.76 |
58.07; 54.28 |
3.79 |
-0.88 |
0.26 |
6.57 |
| SRP_RNA |
2PXK |
131!B:177!B |
G:C |
Wb [---][-] |
10.2 |
46.55; 60.02 |
13.47 |
-7.36 |
0.29 |
8.65 |
| SRP_RNA |
2PXK |
132!B:176!B |
G:U |
Wb [cWW][XXVIII] |
10.24 |
44.01; 64.64 |
20.63 |
-8.77 |
0.49 |
14.83 |
| SRP_RNA |
2PXK |
133!B:175!B |
U:G |
Wb [cWW][XXVIII] |
10.14 |
68.03; 49.53 |
18.5 |
-9.64 |
0.3 |
12.9 |
| SRP_RNA |
2PXK |
134!B:174!B |
G:C |
WC [cWW][XIX] |
10.06 |
55.42; 63.92 |
8.5 |
-7.5 |
0.24 |
12.88 |
| SRP_RNA |
2PXK |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.36 |
53.4; 52.96 |
0.44 |
-8.26 |
0.19 |
12.1 |
| SRP_RNA |
2PXK |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.66 |
55.1; 54.67 |
0.43 |
-8.3 |
0.06 |
15.55 |
| SRP_RNA |
2PXK |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.27 |
70.26; 45.88 |
24.38 |
-15.14 |
0.1 |
12.88 |
| SRP_RNA |
2PXK |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.12 |
71.04; 44.76 |
26.28 |
-14.57 |
0.12 |
18.31 |
| SRP_RNA |
2PXK |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.54 |
57.04; 55.34 |
1.7 |
-3.0 |
0.11 |
5.05 |
| SRP_RNA |
2PXK |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.63 |
158.59; 119.28 |
39.31 |
105.56 |
0.21 |
60.88 |
| SRP_RNA |
2PXK |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.54 |
50.99; 55.13 |
4.14 |
-4.65 |
0.15 |
6.7 |
| SRP_RNA |
2PXK |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.65 |
52.65; 55.53 |
2.89 |
-2.77 |
0.86 |
24.2 |
| SRP_RNA |
2PXK |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.36 |
68.38; 37.12 |
31.26 |
-3.38 |
0.25 |
14.81 |
| SRP_RNA |
2PXK |
147!B:164!B |
C:A |
S [tSH][-] |
9.48 |
85.32; 3.59 |
81.72 |
-78.12 |
0.8 |
10.05 |
| SRP_RNA |
2PXK |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
10.91 |
8.91; 23.53 |
14.62 |
-154.71 |
0.69 |
20.97 |
| SRP_RNA |
2PXK |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.37 |
39.58; 62.49 |
22.9 |
167.03 |
0.91 |
23.23 |
| SRP_RNA |
2PXK |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.46 |
9.96; 80.88 |
70.92 |
-26.18 |
0.51 |
10.02 |
| SRP_RNA |
2PXK |
150!B:161!B |
G:A |
WC [cWW][VIII] |
12.46 |
49.61; 48.96 |
0.65 |
5.7 |
0.19 |
10.07 |
| SRP_RNA |
2PXK |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.77 |
49.89; 57.42 |
7.52 |
-3.52 |
0.64 |
13.26 |
| SRP_RNA |
2PXK |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.23 |
57.01; 50.33 |
6.68 |
-10.06 |
0.14 |
8.68 |
| SRP_RNA |
2PXK |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.46 |
55.68; 50.1 |
5.58 |
2.66 |
0.19 |
5.13 |
| SRP_RNA |
2PXK |
154!B:157!B |
G:A |
S [tSH][XI] |
8.93 |
95.88; 10.74 |
85.14 |
-88.09 |
1.14 |
9.6 |
| SRP_RNA |
2PXK |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.34 |
89.91; 36.6 |
53.31 |
-172.4 |
2.08 |
25.11 |