Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXL
BPC Identified: 22
Ambiguities: 0
| SRP_RNA |
2PXL |
132!B:176!B |
G:U |
Wb [cWW][XXVIII] |
10.07 |
43.88; 70.28 |
26.4 |
-1.56 |
0.01 |
7.87 |
| SRP_RNA |
2PXL |
133!B:175!B |
G:U |
Wb [cWW][XXVIII] |
10.11 |
43.48; 72.47 |
28.99 |
-5.62 |
0.06 |
10.71 |
| SRP_RNA |
2PXL |
134!B:174!B |
G:C |
WC [cWW][XIX] |
10.45 |
55.6; 57.62 |
2.02 |
-9.52 |
0.26 |
15.17 |
| SRP_RNA |
2PXL |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.53 |
57.6; 52.51 |
5.09 |
-8.98 |
0.01 |
10.73 |
| SRP_RNA |
2PXL |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.78 |
53.3; 54.95 |
1.65 |
-11.89 |
0.08 |
18.1 |
| SRP_RNA |
2PXL |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.35 |
67.53; 43.15 |
24.38 |
-15.45 |
0.15 |
16.16 |
| SRP_RNA |
2PXL |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.33 |
68.32; 42.18 |
26.13 |
-13.02 |
0.07 |
16.01 |
| SRP_RNA |
2PXL |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.45 |
57.97; 56.18 |
1.79 |
-0.81 |
0.12 |
3.74 |
| SRP_RNA |
2PXL |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.64 |
160.95; 117.56 |
43.39 |
89.49 |
0.94 |
61.13 |
| SRP_RNA |
2PXL |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.49 |
53.25; 56.85 |
3.6 |
-6.03 |
0.09 |
9.58 |
| SRP_RNA |
2PXL |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.36 |
55.32; 56.12 |
0.81 |
-5.48 |
0.66 |
18.38 |
| SRP_RNA |
2PXL |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.45 |
66.33; 38.44 |
27.9 |
-4.67 |
0.2 |
12.43 |
| SRP_RNA |
2PXL |
147!B:164!B |
C:A |
S [tSH][-] |
9.61 |
83.48; 6.41 |
77.06 |
-36.83 |
0.66 |
3.79 |
| SRP_RNA |
2PXL |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
10.89 |
6.98; 22.08 |
15.11 |
-169.81 |
0.32 |
16.1 |
| SRP_RNA |
2PXL |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.16 |
38.61; 65.41 |
26.81 |
163.58 |
1.53 |
15.8 |
| SRP_RNA |
2PXL |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.67 |
11.68; 83.96 |
72.28 |
-4.91 |
0.06 |
2.99 |
| SRP_RNA |
2PXL |
150!B:161!B |
G:A |
WC [cWW][VIII] |
12.49 |
47.76; 49.36 |
1.6 |
3.39 |
0.17 |
10.81 |
| SRP_RNA |
2PXL |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.55 |
52.48; 55.98 |
3.5 |
-0.08 |
0.69 |
18.55 |
| SRP_RNA |
2PXL |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.59 |
52.11; 50.53 |
1.57 |
-5.59 |
0.31 |
16.15 |
| SRP_RNA |
2PXL |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.44 |
55.21; 51.42 |
3.79 |
3.1 |
0.05 |
5.61 |
| SRP_RNA |
2PXL |
154!B:157!B |
G:A |
S [tSH][XI] |
9.1 |
99.38; 9.71 |
89.68 |
-96.06 |
0.28 |
14.63 |
| SRP_RNA |
2PXL |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.4 |
92.7; 37.44 |
55.26 |
-172.62 |
2.48 |
26.66 |