Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXP
BPC Identified: 24
Ambiguities: 0
| SRP_RNA |
2PXP |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.65 |
55.11; 56.06 |
0.95 |
-3.24 |
0.37 |
1.86 |
| SRP_RNA |
2PXP |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.21 |
51.0; 57.57 |
6.57 |
-4.72 |
0.06 |
8.54 |
| SRP_RNA |
2PXP |
132!B:176!B |
G:U |
Wb [cWW][XXVIII] |
10.14 |
42.29; 70.01 |
27.73 |
-5.93 |
0.25 |
11.48 |
| SRP_RNA |
2PXP |
133!B:175!B |
G:C |
WC [cWW][XIX] |
10.51 |
54.8; 51.62 |
3.17 |
-5.21 |
0.03 |
9.69 |
| SRP_RNA |
2PXP |
134!B:174!B |
C:G |
WC [cWW][XIX] |
10.34 |
59.47; 51.24 |
8.23 |
-5.58 |
0.14 |
11.6 |
| SRP_RNA |
2PXP |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.59 |
54.38; 53.75 |
0.63 |
-12.3 |
0.07 |
15.85 |
| SRP_RNA |
2PXP |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.75 |
55.11; 51.16 |
3.95 |
-6.92 |
0.15 |
13.39 |
| SRP_RNA |
2PXP |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.11 |
70.07; 42.41 |
27.65 |
-15.29 |
0.13 |
13.67 |
| SRP_RNA |
2PXP |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.13 |
70.27; 41.77 |
28.5 |
-13.44 |
0.03 |
15.81 |
| SRP_RNA |
2PXP |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.51 |
57.94; 54.35 |
3.59 |
-4.55 |
0.09 |
5.95 |
| SRP_RNA |
2PXP |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.7 |
159.57; 120.44 |
39.14 |
95.36 |
0.34 |
61.13 |
| SRP_RNA |
2PXP |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.49 |
53.25; 56.2 |
2.95 |
-1.2 |
0.35 |
10.1 |
| SRP_RNA |
2PXP |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.58 |
52.57; 53.43 |
0.85 |
-6.43 |
0.63 |
14.6 |
| SRP_RNA |
2PXP |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.26 |
64.66; 40.76 |
23.89 |
-4.75 |
0.38 |
12.34 |
| SRP_RNA |
2PXP |
147!B:164!B |
C:A |
S [tSH][-] |
9.53 |
82.91; 3.93 |
78.98 |
-72.49 |
0.58 |
5.49 |
| SRP_RNA |
2PXP |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
11.12 |
7.87; 23.36 |
15.49 |
-147.63 |
0.56 |
18.07 |
| SRP_RNA |
2PXP |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.4 |
38.23; 64.16 |
25.92 |
167.86 |
1.08 |
15.78 |
| SRP_RNA |
2PXP |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.81 |
12.61; 82.95 |
70.34 |
-5.83 |
0.19 |
2.83 |
| SRP_RNA |
2PXP |
150!B:161!B |
G:A |
WC [cWW][VIII] |
12.46 |
49.21; 46.08 |
3.13 |
7.29 |
0.03 |
10.46 |
| SRP_RNA |
2PXP |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.91 |
51.21; 50.53 |
0.68 |
-0.84 |
0.54 |
11.98 |
| SRP_RNA |
2PXP |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.6 |
55.06; 47.32 |
7.73 |
-4.87 |
0.07 |
7.54 |
| SRP_RNA |
2PXP |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.27 |
59.66; 48.5 |
11.16 |
3.66 |
0.08 |
5.75 |
| SRP_RNA |
2PXP |
154!B:157!B |
G:A |
S [tSH][XI] |
9.2 |
95.73; 11.86 |
83.87 |
-82.58 |
0.92 |
10.55 |
| SRP_RNA |
2PXP |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.42 |
90.42; 39.23 |
51.19 |
-168.08 |
2.35 |
24.74 |