Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXQ
BPC Identified: 23
Ambiguities: 0
| SRP_RNA |
2PXQ |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.83 |
56.84; 57.78 |
0.94 |
-4.17 |
0.37 |
4.69 |
| SRP_RNA |
2PXQ |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.49 |
48.9; 56.16 |
7.26 |
-9.33 |
0.15 |
14.79 |
| SRP_RNA |
2PXQ |
132!B:176!B |
G:U |
Wb [cWW][XXVIII] |
10.09 |
40.3; 69.78 |
29.48 |
-8.89 |
0.23 |
13.4 |
| SRP_RNA |
2PXQ |
133!B:175!B |
C:G |
WC [cWW][XIX] |
10.49 |
57.82; 56.31 |
1.51 |
-4.52 |
0.05 |
10.01 |
| SRP_RNA |
2PXQ |
134!B:174!B |
C:G |
WC [cWW][XIX] |
10.09 |
59.07; 50.23 |
8.85 |
-12.0 |
0.11 |
15.89 |
| SRP_RNA |
2PXQ |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.52 |
53.81; 56.69 |
2.88 |
-3.56 |
0.04 |
8.21 |
| SRP_RNA |
2PXQ |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.57 |
50.52; 56.44 |
5.92 |
-10.63 |
0.09 |
18.0 |
| SRP_RNA |
2PXQ |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.11 |
67.03; 41.22 |
25.81 |
-11.99 |
0.18 |
10.12 |
| SRP_RNA |
2PXQ |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
9.94 |
70.31; 43.77 |
26.54 |
-13.37 |
0.08 |
17.2 |
| SRP_RNA |
2PXQ |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.46 |
54.83; 54.82 |
0.0 |
0.21 |
0.0 |
2.55 |
| SRP_RNA |
2PXQ |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.63 |
156.37; 119.69 |
36.68 |
91.63 |
0.01 |
57.44 |
| SRP_RNA |
2PXQ |
144!B:167!B |
G:C |
Wb [---][-] |
10.34 |
44.87; 60.22 |
15.35 |
-0.49 |
0.29 |
8.92 |
| SRP_RNA |
2PXQ |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.75 |
51.43; 51.51 |
0.08 |
-3.27 |
0.75 |
17.05 |
| SRP_RNA |
2PXQ |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.41 |
65.0; 39.15 |
25.85 |
-5.6 |
0.41 |
17.65 |
| SRP_RNA |
2PXQ |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
11.02 |
5.3; 25.72 |
20.42 |
-152.48 |
0.62 |
20.3 |
| SRP_RNA |
2PXQ |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.34 |
36.28; 62.16 |
25.88 |
164.22 |
0.3 |
22.58 |
| SRP_RNA |
2PXQ |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.47 |
11.19; 81.9 |
70.71 |
-10.97 |
0.09 |
6.78 |
| SRP_RNA |
2PXQ |
150!B:161!B |
G:A |
WC [cWW][VIII] |
12.49 |
48.43; 43.85 |
4.58 |
7.03 |
0.03 |
9.36 |
| SRP_RNA |
2PXQ |
151!B:160!B |
U:A |
WC [cWW][XX] |
11.04 |
49.66; 49.25 |
0.41 |
1.75 |
0.44 |
13.92 |
| SRP_RNA |
2PXQ |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.05 |
58.8; 48.58 |
10.22 |
-3.2 |
0.13 |
5.59 |
| SRP_RNA |
2PXQ |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.55 |
53.83; 51.04 |
2.79 |
7.17 |
0.07 |
4.85 |
| SRP_RNA |
2PXQ |
154!B:157!B |
G:A |
S [tSH][XI] |
8.59 |
96.38; 12.95 |
83.43 |
-79.42 |
0.88 |
12.5 |
| SRP_RNA |
2PXQ |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.48 |
90.42; 38.22 |
52.2 |
-169.22 |
2.54 |
25.34 |