Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXT
BPC Identified: 24
Ambiguities: 0
| SRP_RNA |
2PXT |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.8 |
51.7; 52.9 |
1.2 |
-6.38 |
0.13 |
12.59 |
| SRP_RNA |
2PXT |
131!B:177!B |
C:G |
WC [cWW][XIX] |
10.39 |
56.09; 52.92 |
3.17 |
-12.72 |
0.04 |
15.97 |
| SRP_RNA |
2PXT |
132!B:176!B |
U:G |
Wb [cWW][XXVIII] |
10.28 |
68.78; 48.75 |
20.03 |
-9.04 |
0.02 |
12.95 |
| SRP_RNA |
2PXT |
133!B:175!B |
G:C |
WC [cWW][XIX] |
10.5 |
53.16; 55.6 |
2.44 |
-5.46 |
0.21 |
13.14 |
| SRP_RNA |
2PXT |
134!B:174!B |
C:G |
WC [cWW][XIX] |
10.45 |
55.64; 52.91 |
2.73 |
-8.18 |
0.04 |
11.99 |
| SRP_RNA |
2PXT |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.69 |
54.23; 53.61 |
0.62 |
-8.0 |
0.03 |
13.22 |
| SRP_RNA |
2PXT |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.63 |
53.61; 55.77 |
2.16 |
-8.37 |
0.21 |
15.53 |
| SRP_RNA |
2PXT |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.33 |
68.71; 42.58 |
26.12 |
-15.71 |
0.35 |
16.21 |
| SRP_RNA |
2PXT |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.23 |
69.42; 41.56 |
27.86 |
-13.54 |
0.01 |
19.99 |
| SRP_RNA |
2PXT |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.67 |
57.12; 53.07 |
4.06 |
-2.66 |
0.09 |
4.39 |
| SRP_RNA |
2PXT |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.62 |
157.96; 118.99 |
38.97 |
93.14 |
0.27 |
60.11 |
| SRP_RNA |
2PXT |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.71 |
52.13; 56.32 |
4.19 |
-6.12 |
0.05 |
8.77 |
| SRP_RNA |
2PXT |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.53 |
55.62; 56.41 |
0.79 |
-7.06 |
0.58 |
18.71 |
| SRP_RNA |
2PXT |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.56 |
65.8; 38.66 |
27.14 |
-4.45 |
0.08 |
11.03 |
| SRP_RNA |
2PXT |
147!B:164!B |
C:A |
S [tSH][-] |
9.69 |
83.95; 5.4 |
78.55 |
-46.4 |
0.5 |
6.21 |
| SRP_RNA |
2PXT |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
11.23 |
9.15; 24.04 |
14.9 |
-172.82 |
0.25 |
18.72 |
| SRP_RNA |
2PXT |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.45 |
40.53; 63.42 |
22.9 |
167.13 |
1.57 |
15.72 |
| SRP_RNA |
2PXT |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.62 |
8.2; 81.48 |
73.29 |
-8.28 |
0.08 |
4.23 |
| SRP_RNA |
2PXT |
150!B:161!B |
G:A |
WC [cWW][VIII] |
12.53 |
47.16; 47.15 |
0.01 |
7.41 |
0.16 |
12.34 |
| SRP_RNA |
2PXT |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.77 |
51.08; 52.63 |
1.56 |
-1.82 |
0.43 |
12.68 |
| SRP_RNA |
2PXT |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.62 |
54.58; 52.32 |
2.26 |
-6.06 |
0.17 |
16.5 |
| SRP_RNA |
2PXT |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.49 |
57.59; 51.12 |
6.47 |
3.56 |
0.06 |
6.79 |
| SRP_RNA |
2PXT |
154!B:157!B |
G:A |
S [tSH][XI] |
9.21 |
96.78; 10.54 |
86.23 |
-93.04 |
0.64 |
11.48 |
| SRP_RNA |
2PXT |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.61 |
89.45; 38.82 |
50.63 |
-167.39 |
2.65 |
27.26 |