Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXU
BPC Identified: 24
Ambiguities: 0
| SRP_RNA |
2PXU |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.55 |
49.78; 59.67 |
9.89 |
-7.43 |
0.29 |
9.43 |
| SRP_RNA |
2PXU |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.54 |
51.05; 53.05 |
2.0 |
-14.58 |
0.3 |
21.54 |
| SRP_RNA |
2PXU |
132!B:176!B |
U:G |
Wb [cWW][XXVIII] |
10.1 |
70.6; 45.83 |
24.77 |
-5.89 |
0.05 |
11.2 |
| SRP_RNA |
2PXU |
133!B:175!B |
G:C |
WC [cWW][XIX] |
10.39 |
53.73; 54.38 |
0.65 |
-5.51 |
0.15 |
12.34 |
| SRP_RNA |
2PXU |
134!B:174!B |
C:G |
WC [cWW][XIX] |
10.22 |
58.61; 49.48 |
9.13 |
-5.93 |
0.09 |
10.03 |
| SRP_RNA |
2PXU |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.61 |
54.06; 54.01 |
0.05 |
-9.42 |
0.03 |
14.41 |
| SRP_RNA |
2PXU |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.8 |
56.99; 52.84 |
4.15 |
-6.92 |
0.25 |
14.07 |
| SRP_RNA |
2PXU |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.2 |
68.37; 42.01 |
26.37 |
-14.31 |
0.16 |
15.83 |
| SRP_RNA |
2PXU |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.14 |
74.53; 40.68 |
33.86 |
-14.27 |
0.23 |
20.36 |
| SRP_RNA |
2PXU |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.59 |
55.7; 54.53 |
1.18 |
-0.41 |
0.11 |
3.84 |
| SRP_RNA |
2PXU |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.61 |
158.06; 118.62 |
39.44 |
94.66 |
0.35 |
57.23 |
| SRP_RNA |
2PXU |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.46 |
50.26; 56.16 |
5.9 |
-5.73 |
0.0 |
8.48 |
| SRP_RNA |
2PXU |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.49 |
52.99; 54.13 |
1.14 |
-8.97 |
0.56 |
18.31 |
| SRP_RNA |
2PXU |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.39 |
65.04; 38.22 |
26.82 |
-4.38 |
0.25 |
11.87 |
| SRP_RNA |
2PXU |
147!B:164!B |
C:A |
S [tSH][-] |
9.44 |
90.57; 4.09 |
86.48 |
-66.59 |
0.82 |
3.62 |
| SRP_RNA |
2PXU |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
10.65 |
11.51; 23.95 |
12.44 |
175.89 |
0.25 |
17.94 |
| SRP_RNA |
2PXU |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.04 |
43.63; 64.87 |
21.24 |
165.91 |
1.43 |
16.0 |
| SRP_RNA |
2PXU |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.67 |
11.55; 82.91 |
71.36 |
-11.47 |
0.05 |
7.58 |
| SRP_RNA |
2PXU |
150!B:161!B |
G:A |
rWb* [---][-] |
12.38 |
49.35; 46.08 |
3.27 |
6.15 |
0.06 |
10.87 |
| SRP_RNA |
2PXU |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.63 |
53.32; 49.85 |
3.47 |
-1.12 |
0.51 |
13.33 |
| SRP_RNA |
2PXU |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.28 |
56.43; 50.41 |
6.02 |
-5.04 |
0.16 |
10.27 |
| SRP_RNA |
2PXU |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.63 |
53.98; 51.63 |
2.36 |
3.03 |
0.02 |
3.28 |
| SRP_RNA |
2PXU |
154!B:157!B |
G:A |
S [tSH][XI] |
9.13 |
92.83; 11.79 |
81.04 |
-88.28 |
0.81 |
12.32 |
| SRP_RNA |
2PXU |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.38 |
88.02; 37.03 |
50.99 |
-166.82 |
2.22 |
24.4 |