Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2PXV
BPC Identified: 23
Ambiguities: 0
| SRP_RNA |
2PXV |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.67 |
52.05; 57.21 |
5.16 |
-11.15 |
0.54 |
9.92 |
| SRP_RNA |
2PXV |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.4 |
49.9; 53.19 |
3.29 |
-15.14 |
0.31 |
14.36 |
| SRP_RNA |
2PXV |
132!B:176!B |
U:G |
Wb [cWW][XXVIII] |
10.24 |
66.89; 38.79 |
28.1 |
-3.87 |
0.08 |
7.95 |
| SRP_RNA |
2PXV |
133!B:175!B |
G:U |
Wb [cWW][XXVIII] |
10.01 |
40.82; 69.75 |
28.92 |
-4.77 |
0.36 |
12.61 |
| SRP_RNA |
2PXV |
134!B:174!B |
G:C |
WC [cWW][XIX] |
10.09 |
51.45; 61.97 |
10.51 |
-3.35 |
0.49 |
12.05 |
| SRP_RNA |
2PXV |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.74 |
58.1; 53.98 |
4.13 |
-3.9 |
0.17 |
3.89 |
| SRP_RNA |
2PXV |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.66 |
52.93; 52.44 |
0.49 |
-5.61 |
0.18 |
13.53 |
| SRP_RNA |
2PXV |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.1 |
71.72; 38.6 |
33.12 |
-13.29 |
0.43 |
13.59 |
| SRP_RNA |
2PXV |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
9.99 |
71.04; 38.91 |
32.12 |
-13.07 |
0.15 |
19.66 |
| SRP_RNA |
2PXV |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.65 |
50.93; 50.96 |
0.03 |
-2.93 |
0.0 |
3.93 |
| SRP_RNA |
2PXV |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.51 |
157.7; 119.51 |
38.19 |
108.86 |
0.81 |
54.76 |
| SRP_RNA |
2PXV |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.21 |
49.47; 56.01 |
6.55 |
-5.37 |
0.35 |
9.57 |
| SRP_RNA |
2PXV |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.22 |
51.44; 54.74 |
3.3 |
-5.8 |
0.48 |
15.24 |
| SRP_RNA |
2PXV |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.26 |
67.12; 34.68 |
32.44 |
-2.99 |
0.07 |
12.81 |
| SRP_RNA |
2PXV |
147!B:164!B |
C:A |
S [tSH][-] |
9.83 |
80.42; 4.25 |
76.17 |
-49.41 |
0.65 |
6.01 |
| SRP_RNA |
2PXV |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
10.46 |
7.29; 25.17 |
17.88 |
-162.83 |
0.37 |
11.57 |
| SRP_RNA |
2PXV |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.01 |
38.74; 63.44 |
24.7 |
170.5 |
1.32 |
12.01 |
| SRP_RNA |
2PXV |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.57 |
10.78; 80.46 |
69.68 |
-15.87 |
0.43 |
3.22 |
| SRP_RNA |
2PXV |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.47 |
53.51; 52.76 |
0.75 |
1.63 |
0.45 |
10.12 |
| SRP_RNA |
2PXV |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.08 |
57.57; 48.24 |
9.33 |
-5.39 |
0.12 |
5.32 |
| SRP_RNA |
2PXV |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.54 |
57.86; 52.35 |
5.51 |
4.34 |
0.04 |
4.55 |
| SRP_RNA |
2PXV |
154!B:157!B |
G:A |
S [tSH][XI] |
9.0 |
97.14; 11.16 |
85.97 |
-87.14 |
0.81 |
12.6 |
| SRP_RNA |
2PXV |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.52 |
93.13; 37.62 |
55.51 |
-169.52 |
2.39 |
23.34 |