Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2Q1O
BPC Identified: 20
Ambiguities: 0
dsRNA |
2Q1O |
101!A:112!B |
C:G |
WC [cWW][XIX] |
10.66 |
55.53; 55.09 |
0.45 |
-8.54 |
0.31 |
13.95 |
dsRNA |
2Q1O |
102!A:111!B |
G:C |
WC [cWW][XIX] |
10.64 |
53.27; 56.06 |
2.79 |
-11.65 |
0.0 |
14.01 |
dsRNA |
2Q1O |
103!A:110!B |
C:G |
WC [cWW][XIX] |
10.71 |
55.08; 54.3 |
0.78 |
-9.01 |
0.07 |
18.4 |
dsRNA |
2Q1O |
105!A:108!B |
A:U |
WC [cWW][XX] |
10.48 |
55.58; 56.01 |
0.43 |
-13.68 |
0.07 |
13.35 |
dsRNA |
2Q1O |
106!A:107!B |
A:U |
WC [cWW][XX] |
10.63 |
54.49; 54.5 |
0.01 |
-13.31 |
0.2 |
20.66 |
dsRNA |
2Q1O |
107!A:106!B |
U:A |
WC [cWW][XX] |
10.5 |
57.64; 55.67 |
1.97 |
-16.44 |
0.36 |
25.14 |
dsRNA |
2Q1O |
108!A:105!B |
U:A |
WC [cWW][XX] |
10.55 |
56.59; 55.98 |
0.61 |
-12.93 |
0.04 |
13.84 |
dsRNA |
2Q1O |
110!A:103!B |
G:C |
WC [cWW][XIX] |
10.77 |
53.19; 52.83 |
0.36 |
-13.09 |
0.04 |
17.92 |
dsRNA |
2Q1O |
111!A:102!B |
C:G |
WC [cWW][XIX] |
10.61 |
57.31; 52.34 |
4.97 |
-13.01 |
0.07 |
17.26 |
dsRNA |
2Q1O |
112!A:101!B |
G:C |
WC [cWW][XIX] |
10.63 |
54.43; 56.46 |
2.03 |
-7.82 |
0.3 |
12.46 |
dsRNA |
2Q1O |
101!C:112!D |
C:G |
WC [cWW][XIX] |
10.73 |
54.1; 54.56 |
0.46 |
-9.67 |
0.2 |
14.37 |
dsRNA |
2Q1O |
102!C:111!D |
G:C |
WC [cWW][XIX] |
10.6 |
53.29; 56.68 |
3.39 |
-14.9 |
0.05 |
16.54 |
dsRNA |
2Q1O |
103!C:110!D |
C:G |
WC [cWW][XIX] |
10.81 |
52.04; 51.38 |
0.66 |
-16.28 |
0.01 |
20.51 |
dsRNA |
2Q1O |
105!C:108!D |
A:U |
WC [cWW][XX] |
10.37 |
56.52; 58.99 |
2.47 |
-13.58 |
0.2 |
15.98 |
dsRNA |
2Q1O |
106!C:107!D |
A:U |
WC [cWW][XX] |
10.53 |
55.38; 55.86 |
0.48 |
-18.1 |
0.22 |
24.28 |
dsRNA |
2Q1O |
107!C:106!D |
U:A |
WC [cWW][XX] |
10.66 |
53.48; 54.23 |
0.75 |
-17.76 |
0.26 |
25.89 |
dsRNA |
2Q1O |
108!C:105!D |
U:A |
WC [cWW][XX] |
10.52 |
56.93; 55.06 |
1.88 |
-14.84 |
0.08 |
15.09 |
dsRNA |
2Q1O |
110!C:103!D |
G:C |
WC [cWW][XIX] |
10.68 |
54.01; 54.75 |
0.74 |
-10.59 |
0.12 |
17.9 |
dsRNA |
2Q1O |
111!C:102!D |
C:G |
WC [cWW][XIX] |
10.65 |
56.95; 52.52 |
4.43 |
-11.17 |
0.06 |
16.04 |
dsRNA |
2Q1O |
112!C:101!D |
G:C |
WC [cWW][XIX] |
10.68 |
56.21; 54.75 |
1.45 |
-9.29 |
0.41 |
15.92 |