Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2QWY BPC Identified: 84 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 2QWY 1!A:30!B G:G H_1 [cWH][VI] 11.87 53.64; 29.27 24.37 -11.28 0.64 12.89
Riboswitch 2QWY 2!A:30!A C:G WC [cWW][XIX] 10.74 54.77; 55.54 0.78 0.12 0.07 4.63
Riboswitch 2QWY 3!A:29!A G:C WC [cWW][XIX] 10.43 54.61; 54.79 0.18 -11.46 0.18 16.35
Riboswitch 2QWY 4!A:28!A C:G WC [cWW][XIX] 10.42 57.2; 53.19 4.01 -4.85 0.07 13.21
Riboswitch 2QWY 5!A:36!A G:A fS [tSW][X] 10.02 95.9; 44.04 51.86 125.64 1.51 62.99
Riboswitch 2QWY 5!A:35!A G:A fS [tSW][X] 9.1 123.57; 16.03 107.54 100.68 0.03 63.45
Riboswitch 2QWY 5!A:27!A G:C WC [cWW][XIX] 10.48 53.69; 55.44 1.76 -0.66 0.3 2.89
Riboswitch 2QWY 6!A:26!A G:U Wb [cWW][XXVIII] 10.2 45.71; 68.28 22.57 -18.12 0.21 17.1
Riboswitch 2QWY 7!A:25!A C:G WC [cWW][XIX] 10.62 58.0; 54.43 3.57 -14.4 0.22 20.14
Riboswitch 2QWY 8!A:42!A G:G H_1 [cWH][VI] 11.35 64.17; 28.51 35.66 15.56 0.04 9.77
Riboswitch 2QWY 9!A:43!A A:C H* [---][-] 12.18 58.08; 27.08 31.0 22.0 0.22 11.88
Riboswitch 2QWY 11!A:45!A U:A H_1 [cWH][XXIII] 8.53 63.34; 46.12 17.22 1.99 0.12 9.17
Riboswitch 2QWY 12!A:46!A U:A H_1 [cWH][XXIII] 8.48 64.15; 46.32 17.83 0.28 0.14 3.35
Riboswitch 2QWY 13!A:18!A A:U rH*_2 [---][-] 12.31 12.06; 30.78 18.71 -129.62 0.64 41.17
Riboswitch 2QWY 13!A:14!A A:A rS(sp:O2*-O1P) [---][-] 8.51 123.39; 118.84 4.55 141.86 2.33 40.47
Riboswitch 2QWY 15!A:51!A C:G WC [cWW][XIX] 10.59 58.31; 57.15 1.16 -1.75 0.2 7.57
Riboswitch 2QWY 16!A:50!A C:G WC [cWW][XIX] 10.61 53.83; 61.76 7.93 -7.73 0.18 12.06
Riboswitch 2QWY 17!A:49!A G:A S [tSH][XI] 10.04 98.71; 10.38 88.33 8.78 0.02 1.33
Riboswitch 2QWY 18!A:48!A U:A rH_2 [---][-] 11.32 33.27; 9.85 23.42 18.19 0.34 39.24
Riboswitch 2QWY 19!A:47!A A:A S [tSH][-] 9.9 6.74; 94.85 88.11 1.77 0.13 4.6
Riboswitch 2QWY 20!A:46!A U:A WC [cWW][XX] 9.82 59.31; 61.45 2.14 10.75 0.48 15.56
Riboswitch 2QWY 21!A:45!A U:A WC [cWW][XX] 10.13 59.64; 59.45 0.19 15.39 0.86 26.07
Riboswitch 2QWY 22!A:43!A G:C WC [cWW][XIX] 10.44 56.39; 58.11 1.72 -11.01 0.11 14.06
Riboswitch 2QWY 23!A:42!A C:G WC [cWW][XIX] 10.45 63.44; 53.3 10.14 -3.85 0.19 9.54
Riboswitch 2QWY 24!A:41!A A:A S [tSH][-] 9.45 92.92; 5.89 87.03 -15.14 0.49 16.89
Riboswitch 2QWY 24!A:40!A A:U WC [cWW][XX] 10.79 54.21; 56.18 1.97 -5.11 0.24 10.77
Riboswitch 2QWY 27!A:37!A C:A rpS(sb:O2*-N3) [cSS][-] 5.3 130.73; 98.06 32.67 -89.07 0.7 53.79
Riboswitch 2QWY 28!A:36!A G:A rpS(sb:O2*-N3) [---][-] 5.32 139.55; 92.6 46.95 -73.03 2.48 58.8
Riboswitch 2QWY 28!A:35!A G:A pfS_1 [---][-] 9.49 115.18; 59.8 55.37 -53.85 0.29 58.64
Riboswitch 2QWY 29!A:33!A C:A pfS [cSW][-] 8.68 129.83; 30.06 99.76 11.62 1.57 50.2
Riboswitch 2QWY 30!A:1!B G:G H_1 [cWH][VI] 11.44 27.7; 61.25 33.56 -10.27 0.39 8.61
Riboswitch 2QWY 2!B:30!B C:G WC [cWW][XIX] 10.82 57.17; 51.28 5.89 3.08 0.17 3.06
Riboswitch 2QWY 3!B:29!B G:C WC [cWW][XIX] 10.45 54.78; 58.59 3.81 -14.07 0.17 26.56
Riboswitch 2QWY 4!B:28!B C:G WC [cWW][XIX] 10.65 52.63; 54.65 2.01 -8.04 0.05 14.15
Riboswitch 2QWY 5!B:36!B G:A fS [tSW][X] 10.04 101.49; 44.49 56.99 118.46 0.86 60.73
Riboswitch 2QWY 5!B:35!B G:A fS [tSW][X] 9.15 132.03; 17.6 114.43 84.1 0.49 59.84
Riboswitch 2QWY 5!B:27!B G:C WC [cWW][XIX] 10.7 57.12; 53.18 3.95 -4.21 0.22 8.79
Riboswitch 2QWY 6!B:38!B G:U rS [tSS][-] 7.88 96.51; 48.01 48.5 164.12 0.39 47.14
Riboswitch 2QWY 6!B:26!B G:U Wb [cWW][XXVIII] 10.07 48.08; 67.16 19.08 -11.13 0.35 9.16
Riboswitch 2QWY 7!B:25!B C:G WC [cWW][XIX] 10.54 57.62; 53.79 3.83 -10.84 0.16 15.74
Riboswitch 2QWY 8!B:42!B G:G H_1 [cWH][VI] 11.3 77.34; 30.23 47.1 2.82 0.37 7.38
Riboswitch 2QWY 9!B:43!B A:C H* [---][-] 12.63 59.75; 27.02 32.73 16.65 0.23 10.73
Riboswitch 2QWY 11!B:45!B U:A H_1 [cWH][XXIII] 8.58 64.13; 46.09 18.04 -4.49 0.11 13.08
Riboswitch 2QWY 12!B:46!B U:A H_1 [cWH][XXIII] 8.46 63.18; 43.32 19.86 1.82 0.13 5.71
Riboswitch 2QWY 13!B:18!B A:U rH*_1 [---][-] 13.23 12.2; 24.56 12.35 -134.26 0.7 15.59
Riboswitch 2QWY 15!B:51!B C:G WC [cWW][XIX] 10.83 50.92; 60.18 9.26 -5.7 0.0 8.69
Riboswitch 2QWY 16!B:50!B C:G WC [cWW][XIX] 10.87 55.24; 53.75 1.49 -5.99 0.03 9.97
Riboswitch 2QWY 18!B:48!B U:A rH_1 [tWH][XXIV] 9.97 35.15; 16.67 18.48 162.8 0.14 13.81
Riboswitch 2QWY 19!B:47!B A:A S [tSH][-] 9.62 11.42; 100.04 88.62 8.38 0.02 3.64
Riboswitch 2QWY 20!B:46!B U:A WC [cWW][XX] 10.06 59.16; 66.96 7.8 14.67 0.41 23.55
Riboswitch 2QWY 21!B:45!B U:A WC [cWW][XX] 10.56 54.31; 57.21 2.9 25.93 0.45 31.42
Riboswitch 2QWY 22!B:43!B G:C WC [cWW][XIX] 10.57 54.92; 52.43 2.49 -9.37 0.03 13.1
Riboswitch 2QWY 23!B:42!B C:G WC [cWW][XIX] 10.51 62.3; 53.0 9.3 -0.19 0.68 14.53
Riboswitch 2QWY 24!B:40!B A:U WC [cWW][XX] 10.44 51.49; 58.05 6.56 1.96 0.13 9.68
Riboswitch 2QWY 27!B:37!B C:A rpS(sb:O2*-N3) [cSS][-] 5.41 127.63; 99.96 27.67 -88.93 0.67 53.26
Riboswitch 2QWY 28!B:36!B G:A rpS(sb:O2*-N3) [---][-] 5.71 140.44; 89.85 50.59 -71.32 2.21 57.8
Riboswitch 2QWY 29!B:33!B C:A pfS [cSW][-] 8.67 133.39; 27.05 106.34 16.13 1.46 38.53
Riboswitch 2QWY 2!C:30!C C:G WC [cWW][XIX] 10.72 57.23; 53.28 3.95 0.64 0.02 8.8
Riboswitch 2QWY 3!C:29!C G:C WC [cWW][XIX] 10.41 53.91; 61.78 7.88 -12.28 0.08 23.53
Riboswitch 2QWY 4!C:28!C C:G WC [cWW][XIX] 10.58 54.94; 50.89 4.05 -13.42 0.1 18.06
Riboswitch 2QWY 5!C:36!C G:A fS [tSW][X] 10.16 99.68; 43.9 55.78 116.57 0.79 58.14
Riboswitch 2QWY 5!C:35!C G:A fS [tSW][X] 9.14 131.83; 15.16 116.67 85.25 0.33 60.53
Riboswitch 2QWY 5!C:27!C G:C WC [cWW][XIX] 10.7 53.68; 54.36 0.68 -9.87 0.18 11.9
Riboswitch 2QWY 6!C:26!C G:U Wb [cWW][XXVIII] 10.21 46.45; 68.11 21.65 -9.18 0.4 12.25
Riboswitch 2QWY 7!C:25!C C:G WC [cWW][XIX] 10.76 53.72; 49.85 3.87 -8.6 0.47 14.72
Riboswitch 2QWY 8!C:42!C G:G H_1 [cWH][VI] 11.07 71.3; 32.75 38.55 10.54 0.43 11.15
Riboswitch 2QWY 9!C:43!C A:C H* [---][-] 12.28 58.3; 30.75 27.54 22.96 0.07 14.59
Riboswitch 2QWY 11!C:45!C U:A H_1 [cWH][XXIII] 8.29 58.87; 48.27 10.59 -6.69 0.0 10.36
Riboswitch 2QWY 12!C:46!C U:A H_1 [cWH][XXIII] 8.27 64.98; 48.86 16.12 0.34 0.03 3.98
Riboswitch 2QWY 13!C:18!C A:U rH*_1 [---][-] 13.33 15.44; 21.34 5.91 179.71 0.21 6.25
Riboswitch 2QWY 15!C:51!C C:G WC [cWW][XIX] 10.8 52.21; 57.97 5.76 -5.59 0.03 7.32
Riboswitch 2QWY 16!C:50!C C:G WC [cWW][XIX] 10.53 57.56; 53.07 4.49 -6.42 0.15 6.61
Riboswitch 2QWY 17!C:49!C G:A S [tSH][XI] 9.8 104.68; 11.25 93.43 -21.1 0.43 10.03
Riboswitch 2QWY 18!C:48!C U:A rH_1 [tWH][XXIV] 9.51 37.98; 17.04 20.93 166.36 0.56 15.89
Riboswitch 2QWY 19!C:47!C A:A S [tSH][-] 9.69 6.48; 98.77 92.29 13.66 0.07 2.34
Riboswitch 2QWY 20!C:46!C U:A WC [cWW][XX] 10.24 56.97; 61.87 4.9 7.67 0.46 14.67
Riboswitch 2QWY 21!C:45!C U:A WC [cWW][XX] 10.42 55.27; 55.31 0.04 17.58 0.58 24.68
Riboswitch 2QWY 22!C:43!C G:C WC [cWW][XIX] 10.65 53.28; 54.15 0.86 -15.55 0.07 19.78
Riboswitch 2QWY 23!C:42!C C:G WC [cWW][XIX] 10.41 59.6; 54.06 5.55 -8.55 0.55 16.33
Riboswitch 2QWY 24!C:41!C A:A S [tSH][-] 10.34 84.42; 2.55 81.88 83.6 0.75 18.61
Riboswitch 2QWY 24!C:40!C A:U WC [cWW][XX] 10.76 49.09; 52.03 2.94 -14.28 0.21 15.22
Riboswitch 2QWY 27!C:37!C C:A rpS(sb:O2*-N3) [cSS][-] 5.37 130.95; 97.13 33.81 -84.37 0.54 52.4
Riboswitch 2QWY 28!C:36!C G:A pfS(sb:O2*-N3) [---][-] 5.42 139.12; 92.28 46.84 -70.01 1.56 53.37
Riboswitch 2QWY 29!C:33!C C:A pfS [cSW][-] 8.7 136.36; 34.6 101.76 13.93 1.39 38.01