Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2RE8
BPC Identified: 31
Ambiguities: 0
tRNA |
2RE8 |
902!B:971!B |
G:C |
WC [cWW][XIX] |
10.95 |
47.39; 51.23 |
3.84 |
2.98 |
0.47 |
12.01 |
tRNA |
2RE8 |
903!B:970!B |
G:C |
WC [cWW][XIX] |
10.48 |
54.55; 57.17 |
2.62 |
-5.08 |
0.07 |
5.86 |
tRNA |
2RE8 |
904!B:969!B |
G:C |
WC [cWW][XIX] |
10.58 |
53.17; 53.51 |
0.34 |
-12.11 |
0.46 |
18.38 |
tRNA |
2RE8 |
905!B:968!B |
G:C |
WC [cWW][XIX] |
10.57 |
54.13; 55.31 |
1.18 |
-6.93 |
0.49 |
24.66 |
tRNA |
2RE8 |
906!B:967!B |
U:A |
WC [cWW][XX] |
10.42 |
59.46; 57.22 |
2.23 |
-11.87 |
0.34 |
15.87 |
tRNA |
2RE8 |
907!B:966!B |
A:U |
WC [cWW][XX] |
10.57 |
50.29; 55.33 |
5.05 |
-12.86 |
0.14 |
14.14 |
tRNA |
2RE8 |
908!B:921!B |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.29 |
99.62; 63.51 |
36.11 |
147.99 |
0.26 |
35.11 |
tRNA |
2RE8 |
908!B:914!B |
U:A |
rH_1 [tWH][XXIV] |
9.64 |
32.86; 18.18 |
14.69 |
177.9 |
0.28 |
15.24 |
tRNA |
2RE8 |
909!B:923!B |
C:G |
rS*_2 [---][-] |
12.69 |
8.04; 11.0 |
2.96 |
20.75 |
1.22 |
23.22 |
tRNA |
2RE8 |
910!B:925!B |
G:C |
WC [cWW][XIX] |
10.33 |
50.29; 59.67 |
9.38 |
-3.49 |
0.18 |
8.28 |
tRNA |
2RE8 |
911!B:924!B |
C:G |
WC [cWW][XIX] |
10.53 |
53.94; 55.48 |
1.53 |
-3.1 |
0.03 |
4.48 |
tRNA |
2RE8 |
912!B:923!B |
C:G |
WC [cWW][XIX] |
10.81 |
54.97; 53.48 |
1.5 |
1.56 |
0.29 |
5.03 |
tRNA |
2RE8 |
913!B:922!B |
A:A |
S [tSH][-] |
9.44 |
93.24; 8.74 |
84.5 |
-13.07 |
0.17 |
7.88 |
tRNA |
2RE8 |
914!B:921!B |
A:A |
pfS [cSW][-] |
9.93 |
31.93; 118.88 |
86.95 |
-31.61 |
0.96 |
31.62 |
tRNA |
2RE8 |
915!B:948!B |
G:C |
rWb [tWW][XXII] |
10.41 |
43.75; 53.91 |
10.16 |
164.05 |
0.0 |
14.92 |
tRNA |
2RE8 |
918!B:955!B |
G:U |
fS_2 [---][-] |
8.9 |
38.16; 107.29 |
69.14 |
-153.02 |
0.53 |
29.28 |
tRNA |
2RE8 |
919!B:956!B |
G:C |
WC [cWW][XIX] |
10.29 |
60.88; 57.8 |
3.07 |
-12.2 |
0.81 |
27.54 |
tRNA |
2RE8 |
927!B:943!B |
C:G |
WC [cWW][XIX] |
10.37 |
56.3; 55.35 |
0.95 |
-14.26 |
0.43 |
20.73 |
tRNA |
2RE8 |
928!B:942!B |
C:G |
WC [cWW][XIX] |
10.39 |
55.37; 59.38 |
4.01 |
-2.4 |
0.12 |
17.06 |
tRNA |
2RE8 |
929!B:941!B |
G:C |
WC [cWW][XIX] |
10.82 |
54.0; 45.43 |
8.57 |
-4.55 |
0.0 |
15.53 |
tRNA |
2RE8 |
930!B:940!B |
G:C |
WC [cWW][XIX] |
10.23 |
58.06; 66.88 |
8.82 |
-11.06 |
0.47 |
19.36 |
tRNA |
2RE8 |
931!B:939!B |
A:U |
WC [cWW][XX] |
10.39 |
56.15; 55.72 |
0.43 |
-0.59 |
0.15 |
10.12 |
tRNA |
2RE8 |
932!B:938!B |
U:U |
Wb_mo [cWW][XVI] |
10.7 |
55.66; 26.82 |
28.84 |
9.16 |
0.02 |
12.88 |
tRNA |
2RE8 |
933!B:937!B |
U:A |
S [tSH][-] |
9.44 |
80.86; 5.64 |
75.22 |
165.71 |
0.99 |
19.56 |
tRNA |
2RE8 |
949!B:965!B |
C:G |
WC [cWW][XIX] |
10.74 |
50.19; 52.21 |
2.02 |
-5.49 |
0.19 |
11.7 |
tRNA |
2RE8 |
950!B:964!B |
G:C |
WC [cWW][XIX] |
10.72 |
57.15; 50.44 |
6.71 |
-5.69 |
0.12 |
17.29 |
tRNA |
2RE8 |
951!B:963!B |
A:U |
WC [cWW][XX] |
10.1 |
57.61; 57.02 |
0.6 |
-5.25 |
0.2 |
9.24 |
tRNA |
2RE8 |
952!B:962!B |
G:C |
WC [cWW][XIX] |
10.69 |
47.44; 54.52 |
7.08 |
-3.2 |
0.09 |
8.27 |
tRNA |
2RE8 |
953!B:961!B |
G:C |
WC [cWW][XIX] |
10.39 |
61.16; 56.25 |
4.9 |
-6.42 |
0.09 |
10.59 |
tRNA |
2RE8 |
954!B:958!B |
U:A |
rH_1 [tWH][XXIV] |
10.66 |
33.16; 4.23 |
28.93 |
-113.14 |
0.27 |
10.38 |
tRNA |
2RE8 |
955!B:957!B |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.7 |
77.86; 38.03 |
39.84 |
-169.98 |
0.83 |
34.93 |