Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2RFK
BPC Identified: 27
Ambiguities: 0
| gRNA |
2RFK |
1!D:20!E |
G:C |
WC [cWW][XIX] |
10.64 |
53.56; 53.95 |
0.39 |
-8.91 |
0.07 |
11.22 |
| gRNA |
2RFK |
2!D:19!E |
G:C |
WC [cWW][XIX] |
10.73 |
48.9; 52.34 |
3.44 |
-12.17 |
0.06 |
22.49 |
| gRNA |
2RFK |
3!D:18!E |
G:C |
WC [cWW][XIX] |
11.09 |
46.91; 52.91 |
6.0 |
-11.78 |
0.06 |
13.67 |
| gRNA |
2RFK |
4!D:17!E |
C:G |
WC [cWW][XIX] |
10.91 |
54.87; 51.14 |
3.73 |
-20.39 |
0.16 |
22.83 |
| gRNA |
2RFK |
5!D:16!E |
U:A |
Wb* [---][-] |
11.1 |
44.27; 60.31 |
16.03 |
-22.21 |
0.71 |
19.27 |
| gRNA |
2RFK |
6!D:15!E |
C:G |
WC [cWW][XIX] |
10.74 |
53.07; 51.03 |
2.04 |
-16.97 |
0.0 |
20.17 |
| gRNA |
2RFK |
7!D:14!E |
C:G |
WC [cWW][XIX] |
10.76 |
48.89; 61.3 |
12.41 |
-16.72 |
0.46 |
19.22 |
| gRNA |
2RFK |
8!D:13!E |
G:C |
WC [cWW][XIX] |
10.93 |
44.05; 49.52 |
5.47 |
-13.95 |
0.23 |
15.36 |
| gRNA |
2RFK |
9!D:12!E |
G:C |
WC [cWW][XIX] |
11.34 |
44.2; 41.81 |
2.39 |
-11.32 |
0.07 |
14.41 |
| gRNA |
2RFK |
11!D:16!F |
A:U |
WC [cWW][XX] |
9.79 |
63.63; 61.65 |
1.97 |
-11.75 |
0.18 |
20.42 |
| gRNA |
2RFK |
12!D:15!F |
A:U |
WC [cWW][XX] |
10.57 |
49.06; 60.52 |
11.46 |
-7.85 |
0.08 |
14.42 |
| gRNA |
2RFK |
13!D:14!F |
C:G |
WC [cWW][XIX] |
10.62 |
54.9; 57.97 |
3.07 |
1.15 |
0.63 |
20.94 |
| gRNA |
2RFK |
14!D:13!F |
C:G |
Wb* [---][-] |
11.17 |
45.24; 63.75 |
18.51 |
9.45 |
0.61 |
34.03 |
| gRNA |
2RFK |
15!D:12!F |
G:C |
Wb* [---][-] |
10.77 |
65.07; 46.4 |
18.67 |
10.88 |
0.59 |
7.08 |
| gRNA |
2RFK |
16!D:11!F |
C:G |
Wb [---][-] |
10.73 |
61.55; 45.89 |
15.66 |
10.23 |
0.8 |
11.05 |
| gRNA |
2RFK |
17!D:5!E |
G:U |
Wb [cWW][XXVIII] |
10.62 |
47.12; 68.19 |
21.07 |
3.77 |
0.15 |
2.45 |
| gRNA |
2RFK |
18!D:4!E |
G:C |
WC [cWW][XIX] |
10.37 |
60.19; 59.71 |
0.48 |
-12.52 |
0.1 |
17.03 |
| gRNA |
2RFK |
19!D:3!E |
C:G |
WC [cWW][XIX] |
10.5 |
49.46; 55.91 |
6.45 |
-10.32 |
0.16 |
13.58 |
| gRNA |
2RFK |
20!D:2!E |
G:C |
WC [cWW][XIX] |
10.87 |
52.73; 51.37 |
1.36 |
-8.93 |
0.04 |
13.16 |
| gRNA |
2RFK |
21!D:1!E |
C:G |
WC [cWW][XIX] |
10.86 |
50.73; 59.8 |
9.07 |
-7.98 |
0.1 |
9.16 |
| gRNA |
2RFK |
6!E:7!E |
U:C |
pS [cSH][-] |
6.64 |
133.94; 46.55 |
87.39 |
35.34 |
1.18 |
25.22 |
| gRNA |
2RFK |
7!E:9!F |
C:G |
srWC* [---][-] |
13.29 |
20.22; 30.02 |
9.8 |
-1.4 |
1.01 |
28.66 |
| gRNA |
2RFK |
8!E:9!F |
G:G |
rWb* [tWW][III] |
12.36 |
39.75; 14.25 |
25.51 |
152.76 |
2.11 |
23.96 |
| gRNA |
2RFK |
8!E:8!F |
G:C |
WC [cWW][XIX] |
10.52 |
54.5; 54.91 |
0.41 |
-1.4 |
0.22 |
9.87 |
| gRNA |
2RFK |
9!E:7!F |
C:G |
WC [cWW][XIX] |
11.03 |
53.61; 52.27 |
1.34 |
-9.92 |
0.0 |
11.68 |
| gRNA |
2RFK |
10!E:6!F |
U:A |
WC [cWW][XX] |
10.88 |
53.07; 59.39 |
6.32 |
-10.26 |
0.08 |
11.05 |
| gRNA |
2RFK |
11!E:5!F |
C:G |
WC [cWW][XIX] |
10.76 |
52.71; 63.03 |
10.32 |
-6.95 |
0.67 |
19.7 |