Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2VPL BPC Identified: 40 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
mRNA 2VPL 2!B:48!B G:C WC [cWW][XIX] 10.85 53.82; 47.45 6.36 -3.29 0.06 3.83
mRNA 2VPL 3!B:47!B G:C WC [cWW][XIX] 10.73 52.38; 50.65 1.73 -6.03 0.12 13.13
mRNA 2VPL 4!B:46!B A:U WC [cWW][XX] 10.83 51.1; 50.68 0.41 -7.05 0.14 10.23
mRNA 2VPL 5!B:45!B G:C WC [cWW][XIX] 10.77 49.77; 51.54 1.77 -10.64 0.1 14.15
mRNA 2VPL 6!B:44!B U:A WC [cWW][XX] 10.65 52.71; 52.21 0.5 -11.92 0.08 14.6
mRNA 2VPL 7!B:43!B G:C WC [cWW][XIX] 10.85 51.11; 48.76 2.35 -12.48 0.16 13.77
mRNA 2VPL 8!B:42!B A:U WC [cWW][XX] 10.58 53.82; 54.08 0.27 -9.16 0.22 14.67
mRNA 2VPL 9!B:41!B A:U WC [cWW][XX] 10.61 56.01; 52.69 3.31 -8.02 0.08 12.32
mRNA 2VPL 10!B:40!B G:C WC [cWW][XIX] 10.45 55.92; 56.5 0.58 -12.91 0.33 26.67
mRNA 2VPL 11!B:39!B G:A S [tSH][XI] 9.73 95.03; 4.98 90.06 6.44 0.5 16.2
mRNA 2VPL 12!B:34!B A:G rS [tSS][-] 8.45 57.44; 90.14 32.7 140.28 0.9 45.02
mRNA 2VPL 13!B:39!B G:A rS [tSS][-] 8.12 87.02; 56.3 30.72 -155.62 1.22 47.35
mRNA 2VPL 13!B:33!B G:C WC [cWW][XIX] 10.5 54.28; 57.94 3.66 -4.02 0.11 8.97
mRNA 2VPL 14!B:32!B G:C WC [cWW][XIX] 10.63 52.88; 55.4 2.52 -0.15 0.15 9.53
mRNA 2VPL 15!B:31!B C:G WC [cWW][XIX] 10.79 55.57; 48.63 6.95 -0.4 0.22 1.02
mRNA 2VPL 16!B:30!B U:A WC [cWW][XX] 10.44 55.22; 54.34 0.89 -5.62 0.18 12.16
mRNA 2VPL 17!B:28!B C:G WC [cWW][XIX] 11.04 51.59; 48.61 2.99 -1.77 0.22 9.73
mRNA 2VPL 18!B:27!B G:C WC [cWW][XIX] 10.89 56.01; 48.01 8.0 -12.41 0.18 20.01
mRNA 2VPL 19!B:26!B C:G Wb* [---][-] 12.2 34.93; 53.8 18.86 -3.43 0.14 24.34
mRNA 2VPL 2!D:49!D G:C WC [cWW][XIX] 11.48 48.41; 47.12 1.29 -28.97 1.63 16.6
mRNA 2VPL 2!D:48!D G:C WC_mo [cWW][XIX] 12.65 39.65; 31.78 7.87 -9.27 0.64 35.52
mRNA 2VPL 3!D:47!D G:C WC [cWW][XIX] 11.22 52.48; 46.25 6.23 -3.19 0.15 1.42
mRNA 2VPL 4!D:46!D A:U Wb [---][-] 11.28 37.74; 58.69 20.95 -11.54 0.18 17.5
mRNA 2VPL 5!D:45!D G:C WC [cWW][XIX] 10.56 53.85; 57.58 3.73 -12.43 0.26 21.14
mRNA 2VPL 6!D:44!D U:A WC [cWW][XX] 10.79 53.99; 53.95 0.03 -12.02 0.17 16.97
mRNA 2VPL 7!D:43!D G:C WC [cWW][XIX] 10.82 54.52; 53.6 0.92 -11.86 0.4 15.59
mRNA 2VPL 8!D:42!D A:U WC [cWW][XX] 10.63 54.55; 56.32 1.77 -10.88 0.11 15.61
mRNA 2VPL 9!D:41!D A:U WC [cWW][XX] 10.51 57.44; 54.13 3.3 -9.99 0.17 15.17
mRNA 2VPL 10!D:40!D G:C WC [cWW][XIX] 10.37 56.39; 54.81 1.58 -11.96 0.3 24.14
mRNA 2VPL 11!D:39!D G:A S [tSH][XI] 9.74 93.15; 4.76 88.4 -4.54 0.48 14.49
mRNA 2VPL 12!D:34!D A:G rS [tSS][-] 8.31 56.25; 89.69 33.44 141.8 0.86 42.62
mRNA 2VPL 13!D:39!D G:A rS [tSS][-] 8.1 85.24; 56.75 28.48 -155.86 1.02 46.94
mRNA 2VPL 13!D:33!D G:C WC [cWW][XIX] 10.5 53.13; 54.81 1.68 -0.68 0.28 7.64
mRNA 2VPL 14!D:32!D G:C WC [cWW][XIX] 10.75 54.41; 50.68 3.73 -0.89 0.38 17.68
mRNA 2VPL 15!D:31!D C:G WC [cWW][XIX] 10.85 54.49; 52.71 1.78 -2.23 0.09 5.19
mRNA 2VPL 16!D:30!D U:A WC [cWW][XX] 10.61 54.29; 51.17 3.13 -2.47 0.07 7.04
mRNA 2VPL 17!D:28!D C:G WC [cWW][XIX] 11.07 53.32; 51.71 1.61 -5.57 0.05 5.06
mRNA 2VPL 18!D:27!D G:C WC [cWW][XIX] 10.33 50.5; 62.0 11.5 -13.63 0.09 19.08
mRNA 2VPL 19!D:26!D C:G WC [cWW][XIX] 11.13 53.4; 50.29 3.11 -12.83 0.24 20.67
mRNA 2VPL 20!D:25!D G:C Wb* [---][-] 12.2 51.66; 36.45 15.21 22.34 0.69 23.85