Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2WWB
BPC Identified: 59
Ambiguities: 0
rRNA |
2WWB |
41!D:103!D |
A:G |
S [tSH][XI] |
9.4 |
15.68; 94.89 |
79.21 |
51.07 |
2.13 |
5.11 |
rRNA |
2WWB |
42!D:102!D |
G:U |
Wb [cWW][XXVIII] |
10.45 |
49.45; 67.2 |
17.75 |
-11.19 |
0.0 |
25.71 |
rRNA |
2WWB |
43!D:101!D |
A:U |
WC [cWW][XX] |
10.31 |
59.67; 61.74 |
2.07 |
-18.66 |
0.8 |
20.6 |
rRNA |
2WWB |
44!D:100!D |
A:U |
WC [cWW][XX] |
11.19 |
46.57; 49.35 |
2.78 |
-22.11 |
0.95 |
28.33 |
rRNA |
2WWB |
45!D:58!D |
C:G |
WC [cWW][XIX] |
11.06 |
50.78; 49.74 |
1.04 |
-15.47 |
0.52 |
18.11 |
rRNA |
2WWB |
46!D:61!D |
G:A |
rS [tSS][-] |
8.69 |
83.82; 51.55 |
32.27 |
156.8 |
0.75 |
43.88 |
rRNA |
2WWB |
46!D:57!D |
G:C |
WC [cWW][XIX] |
10.95 |
51.7; 51.12 |
0.58 |
-25.56 |
1.13 |
21.08 |
rRNA |
2WWB |
47!D:56!D |
C:G |
Wb [---][-] |
10.56 |
63.98; 46.56 |
17.42 |
-36.93 |
1.99 |
31.87 |
rRNA |
2WWB |
51!D:75!D |
G:G |
H_1 [cWH][VI] |
10.72 |
67.44; 12.26 |
55.18 |
-9.37 |
0.14 |
68.37 |
rRNA |
2WWB |
51!D:53!D |
G:A |
fS [tSW][X] |
9.23 |
117.6; 18.31 |
99.29 |
35.59 |
1.12 |
13.39 |
rRNA |
2WWB |
51!D:52!D |
G:A |
pS_1 [cSH][-] |
6.94 |
146.74; 32.74 |
114.0 |
6.54 |
0.95 |
11.87 |
rRNA |
2WWB |
57!D:61!D |
C:A |
rpS(bs:O2-O2*) [cSS][-] |
6.19 |
103.49; 144.59 |
41.09 |
-6.77 |
0.02 |
22.87 |
rRNA |
2WWB |
58!D:59!D |
G:A |
pfS_1 [---][-] |
7.56 |
130.26; 79.64 |
50.62 |
9.19 |
0.89 |
11.73 |
rRNA |
2WWB |
64!D:96!D |
U:A |
WC [cWW][XX] |
10.56 |
52.42; 63.43 |
11.01 |
-12.72 |
1.41 |
36.09 |
rRNA |
2WWB |
66!D:93!D |
A:U |
WC [cWW][XX] |
10.56 |
64.6; 51.82 |
12.78 |
-15.26 |
1.01 |
7.23 |
rRNA |
2WWB |
67!D:92!D |
U:A |
WC [cWW][XX] |
10.81 |
57.88; 54.93 |
2.94 |
-3.74 |
0.33 |
5.73 |
rRNA |
2WWB |
68!D:89!D |
G:A |
S [tSH][XI] |
9.87 |
104.91; 9.72 |
95.19 |
-14.77 |
0.31 |
11.37 |
rRNA |
2WWB |
72!D:81!D |
A:U |
WC [cWW][XX] |
10.76 |
56.1; 55.27 |
0.83 |
0.49 |
0.24 |
5.61 |
rRNA |
2WWB |
73!D:80!D |
U:A |
WC [cWW][XX] |
10.78 |
48.38; 59.34 |
10.96 |
9.11 |
0.62 |
10.51 |
rRNA |
2WWB |
74!D:79!D |
U:A |
WC [cWW][XX] |
10.41 |
56.31; 59.95 |
3.64 |
1.75 |
0.3 |
23.73 |
rRNA |
2WWB |
89!D:92!D |
A:A |
H_1 [---][-] |
10.4 |
68.86; 25.39 |
43.47 |
29.35 |
2.24 |
24.14 |
rRNA |
2WWB |
528!E:532!E |
U:A |
rH_1 [tWH][XXIV] |
10.22 |
34.33; 16.13 |
18.2 |
-162.36 |
0.34 |
3.93 |
rRNA |
2WWB |
529!E:554!E |
G:A |
pfS(sb:O2*-N6) [---][-] |
10.22 |
169.48; 25.55 |
143.92 |
159.33 |
0.02 |
10.6 |
rRNA |
2WWB |
529!E:533!E |
G:A |
S [tSH][XI] |
9.52 |
97.39; 2.43 |
94.96 |
-47.28 |
0.53 |
21.57 |
rRNA |
2WWB |
529!E:531!E |
G:A |
S(sb:O2*-N7) [---][-] |
7.56 |
82.77; 33.53 |
49.24 |
-166.73 |
1.59 |
29.07 |
rRNA |
2WWB |
532!E:555!E |
A:A |
rWb* [tWW][I] |
13.81 |
31.69; 24.67 |
7.02 |
-163.32 |
0.08 |
22.33 |
rRNA |
2WWB |
533!E:557!E |
A:A |
rWb* [tWW][I] |
13.22 |
33.12; 32.15 |
0.97 |
-122.64 |
0.84 |
31.25 |
rRNA |
2WWB |
533!E:551!E |
A:U |
rpS(sb:O2*-N3) [cSS][-] |
5.61 |
101.72; 141.02 |
39.29 |
4.51 |
1.16 |
15.14 |
rRNA |
2WWB |
534!E:561!E |
G:C |
WC [cWW][XIX] |
10.89 |
55.83; 48.66 |
7.18 |
13.92 |
1.16 |
33.92 |
rRNA |
2WWB |
536!E:549!E |
A:A |
S [tSH][-] |
9.43 |
9.24; 97.65 |
88.41 |
29.15 |
0.1 |
15.27 |
rRNA |
2WWB |
537!E:548!E |
C:G |
Wb* [---][-] |
10.89 |
48.28; 72.17 |
23.89 |
1.28 |
0.58 |
14.89 |
rRNA |
2WWB |
538!E:547!E |
U:A |
WC [cWW][XX] |
10.71 |
56.92; 55.27 |
1.65 |
-3.05 |
0.09 |
11.47 |
rRNA |
2WWB |
539!E:546!E |
U:G |
WC [---][-] |
10.84 |
53.3; 51.14 |
2.16 |
-4.0 |
0.35 |
16.01 |
rRNA |
2WWB |
540!E:545!E |
U:A |
Wb [---][-] |
10.5 |
64.97; 47.98 |
17.0 |
-3.52 |
0.22 |
6.43 |
rRNA |
2WWB |
541!E:544!E |
G:A |
S [tSH][XI] |
9.14 |
93.95; 12.24 |
81.71 |
-97.6 |
0.68 |
18.91 |
rRNA |
2WWB |
541!E:543!E |
G:A |
S(sb:O2*-N7) [---][-] |
8.18 |
85.72; 35.78 |
49.93 |
-177.46 |
2.28 |
24.54 |
rRNA |
2WWB |
550!E:558!E |
G:G |
rH_2_Mo [---][-] |
12.9 |
40.16; 21.87 |
18.29 |
55.76 |
1.74 |
39.45 |
rRNA |
2WWB |
551!E:555!E |
U:A |
rH_1 [tWH][XXIV] |
9.81 |
34.15; 21.42 |
12.73 |
172.42 |
0.9 |
19.46 |
rRNA |
2WWB |
552!E:557!E |
G:A |
S [tSH][XI] |
9.79 |
95.82; 3.33 |
92.49 |
-28.85 |
1.06 |
32.55 |
rRNA |
2WWB |
552!E:555!E |
G:A |
S(bp:N1-O2P)_1 [---][-] |
8.78 |
64.73; 33.66 |
31.07 |
-105.17 |
2.48 |
31.14 |
rRNA |
2WWB |
552!E:554!E |
G:A |
S(sb:O2*-N7) [---][-] |
7.58 |
84.25; 35.58 |
48.67 |
-157.15 |
1.22 |
33.82 |
rRNA |
2WWB |
558!E:559!E |
G:U |
pS* [cHS][-] |
6.21 |
141.84; 55.4 |
86.45 |
43.01 |
0.36 |
40.05 |
rRNA |
2WWB |
559!E:560!E |
U:A |
S(sp:O2*-O2P) [---][-] |
9.13 |
171.56; 97.66 |
73.91 |
-20.47 |
0.85 |
61.4 |
rRNA |
2WWB |
560!E:561!E |
A:C |
S*(ps:O2P-O2*) [---][-] |
8.55 |
134.69; 76.13 |
58.55 |
56.92 |
2.36 |
61.11 |
rRNA |
2WWB |
1654!F:1678!F |
C:G |
WC [cWW][XIX] |
11.1 |
43.83; 53.38 |
9.55 |
-15.52 |
0.96 |
26.34 |
rRNA |
2WWB |
1655!F:1677!F |
C:G |
WC [cWW][XIX] |
10.65 |
54.4; 53.24 |
1.16 |
-15.87 |
0.12 |
22.31 |
rRNA |
2WWB |
1656!F:1676!F |
A:U |
WC [cWW][XX] |
10.67 |
58.91; 53.02 |
5.89 |
-5.8 |
0.11 |
18.3 |
rRNA |
2WWB |
1657!F:1675!F |
C:G |
WC [cWW][XIX] |
10.73 |
54.27; 55.13 |
0.85 |
-10.19 |
0.58 |
25.46 |
rRNA |
2WWB |
1658!F:1674!F |
G:C |
WC [cWW][XIX] |
10.91 |
51.54; 51.75 |
0.21 |
-13.79 |
0.43 |
31.96 |
rRNA |
2WWB |
1659!F:1673!F |
U:A |
WC [cWW][XX] |
11.15 |
52.37; 41.36 |
11.02 |
-27.52 |
0.28 |
29.41 |
rRNA |
2WWB |
1660!F:1671!F |
C:G |
rH_1 [tWH][-] |
11.21 |
22.95; 5.9 |
17.05 |
-168.09 |
0.03 |
10.94 |
rRNA |
2WWB |
1662!F:1673!F |
A:A |
pfS [cSW][-] |
8.49 |
43.68; 123.85 |
80.16 |
-25.54 |
0.4 |
48.47 |
rRNA |
2WWB |
1663!F:1671!F |
C:G |
WC [cWW][XIX] |
10.74 |
54.54; 52.95 |
1.59 |
-24.36 |
0.23 |
33.97 |
rRNA |
2WWB |
1664!F:1670!F |
A:U |
WC [cWW][XX] |
10.58 |
51.7; 59.58 |
7.88 |
-4.19 |
1.08 |
26.24 |
rRNA |
2WWB |
1917!G:1930!G |
A:U |
WC [cWW][XX] |
10.39 |
54.99; 59.9 |
4.9 |
0.73 |
0.81 |
17.07 |
rRNA |
2WWB |
1918!G:1929!G |
C:G |
WC [cWW][XIX] |
10.99 |
47.68; 51.97 |
4.29 |
-15.61 |
0.35 |
27.3 |
rRNA |
2WWB |
1919!G:1928!G |
A:G |
WC [cWW][VIII] |
12.69 |
50.11; 49.04 |
1.06 |
1.27 |
1.67 |
20.39 |
rRNA |
2WWB |
1920!G:1928!G |
C:G |
Wb* [---][-] |
10.76 |
49.26; 66.2 |
16.93 |
-18.73 |
1.12 |
39.56 |
rRNA |
2WWB |
1921!G:1927!G |
G:C |
WC [cWW][XIX] |
10.69 |
51.39; 56.92 |
5.53 |
-5.71 |
0.23 |
17.86 |