Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2XKV
BPC Identified: 16
Ambiguities: 0
| SRP_RNA |
2XKV |
14!B:96!B |
G:G |
S_1 [tSH][-] |
11.9 |
85.65; 20.04 |
65.62 |
22.83 |
1.57 |
9.14 |
| SRP_RNA |
2XKV |
16!B:94!B |
U:U |
WC [---][-] |
9.46 |
58.09; 61.32 |
3.24 |
-9.3 |
1.67 |
9.21 |
| SRP_RNA |
2XKV |
17!B:92!B |
C:U |
WC_mo [cWW][XVIII] |
12.44 |
26.44; 38.55 |
12.11 |
8.2 |
0.58 |
13.26 |
| SRP_RNA |
2XKV |
19!B:91!B |
C:A |
WC [---][-] |
9.8 |
66.2; 55.67 |
10.53 |
-3.62 |
0.54 |
14.08 |
| SRP_RNA |
2XKV |
20!B:90!B |
U:G |
Wb [cWW][XXVIII] |
9.85 |
76.35; 36.9 |
39.45 |
8.87 |
1.04 |
21.8 |
| SRP_RNA |
2XKV |
26!B:81!B |
C:G |
Wb [---][-] |
10.68 |
67.93; 44.86 |
23.07 |
-16.54 |
0.04 |
24.29 |
| SRP_RNA |
2XKV |
27!B:80!B |
U:A |
Wb* [---][-] |
10.19 |
53.27; 69.05 |
15.78 |
-15.44 |
0.69 |
15.08 |
| SRP_RNA |
2XKV |
43!B:66!B |
G:C |
WC [cWW][XIX] |
10.55 |
55.44; 65.24 |
9.81 |
-8.59 |
0.12 |
18.54 |
| SRP_RNA |
2XKV |
44!B:65!B |
G:C |
WC [cWW][XIX] |
11.25 |
52.75; 39.62 |
13.13 |
-0.35 |
0.61 |
31.98 |
| SRP_RNA |
2XKV |
45!B:64!B |
U:G |
Wb [cWW][XXVIII] |
11.12 |
61.47; 20.83 |
40.65 |
1.76 |
0.5 |
19.63 |
| SRP_RNA |
2XKV |
49!B:60!B |
G:A |
WC [cWW][VIII] |
13.19 |
45.54; 33.22 |
12.32 |
-7.08 |
0.29 |
26.61 |
| SRP_RNA |
2XKV |
50!B:60!B |
U:A |
Wb [---][-] |
10.4 |
58.43; 46.46 |
11.96 |
-38.68 |
1.63 |
26.08 |
| SRP_RNA |
2XKV |
50!B:59!B |
U:A |
WC [cWW][XX] |
11.82 |
39.96; 41.93 |
1.97 |
-12.09 |
0.33 |
31.77 |
| SRP_RNA |
2XKV |
51!B:58!B |
C:G |
WC_mo [cWW][XIX] |
11.74 |
42.15; 45.35 |
3.2 |
-11.02 |
0.21 |
32.9 |
| SRP_RNA |
2XKV |
53!B:56!B |
G:A |
S [tSH][XI] |
9.8 |
85.8; 23.9 |
61.9 |
-73.97 |
0.55 |
46.78 |
| SRP_RNA |
2XKV |
53!B:55!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.52 |
86.17; 33.12 |
53.05 |
-133.82 |
0.45 |
49.86 |