Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2ZI0
BPC Identified: 18
Ambiguities: 0
siRNA |
2ZI0 |
1!C:19!D |
A:U |
WC [cWW][XX] |
10.29 |
53.56; 62.39 |
8.84 |
-4.75 |
0.56 |
18.98 |
siRNA |
2ZI0 |
2!C:18!D |
G:C |
WC [cWW][XIX] |
10.83 |
51.91; 52.65 |
0.74 |
-13.95 |
0.14 |
16.27 |
siRNA |
2ZI0 |
3!C:17!D |
A:U |
WC [cWW][XX] |
10.4 |
57.42; 57.44 |
0.02 |
-12.49 |
0.09 |
20.58 |
siRNA |
2ZI0 |
4!C:16!D |
C:G |
WC [cWW][XIX] |
10.62 |
57.36; 52.01 |
5.34 |
-6.49 |
0.14 |
9.64 |
siRNA |
2ZI0 |
5!C:15!D |
A:U |
WC [cWW][XX] |
10.32 |
58.86; 57.36 |
1.5 |
-5.51 |
0.01 |
7.17 |
siRNA |
2ZI0 |
6!C:14!D |
G:C |
WC [cWW][XIX] |
10.7 |
51.65; 58.28 |
6.63 |
-7.93 |
0.06 |
12.09 |
siRNA |
2ZI0 |
7!C:13!D |
C:G |
WC [cWW][XIX] |
10.66 |
54.43; 54.48 |
0.04 |
-4.46 |
0.02 |
14.09 |
siRNA |
2ZI0 |
8!C:12!D |
A:U |
WC [cWW][XX] |
10.31 |
58.23; 56.43 |
1.8 |
-2.06 |
0.13 |
9.18 |
siRNA |
2ZI0 |
9!C:11!D |
U:A |
WC [cWW][XX] |
10.35 |
60.91; 53.83 |
7.08 |
4.36 |
0.24 |
11.15 |
siRNA |
2ZI0 |
11!C:9!D |
A:U |
WC [cWW][XX] |
10.38 |
55.63; 54.3 |
1.33 |
3.59 |
0.19 |
7.57 |
siRNA |
2ZI0 |
12!C:8!D |
U:A |
WC [cWW][XX] |
10.21 |
55.86; 58.24 |
2.39 |
-1.64 |
0.36 |
9.62 |
siRNA |
2ZI0 |
13!C:7!D |
G:C |
WC [cWW][XIX] |
10.66 |
54.65; 57.07 |
2.42 |
-6.06 |
0.3 |
13.38 |
siRNA |
2ZI0 |
14!C:6!D |
C:G |
WC [cWW][XIX] |
10.71 |
54.95; 54.6 |
0.35 |
-4.17 |
0.01 |
7.38 |
siRNA |
2ZI0 |
15!C:5!D |
U:A |
WC [cWW][XX] |
10.43 |
58.57; 57.37 |
1.21 |
-6.76 |
0.03 |
7.87 |
siRNA |
2ZI0 |
16!C:4!D |
G:C |
WC [cWW][XIX] |
10.62 |
55.52; 59.28 |
3.76 |
-6.52 |
0.08 |
9.92 |
siRNA |
2ZI0 |
17!C:3!D |
U:A |
WC [cWW][XX] |
10.51 |
54.83; 55.41 |
0.58 |
-13.02 |
0.04 |
18.08 |
siRNA |
2ZI0 |
18!C:2!D |
C:G |
WC [cWW][XIX] |
10.76 |
53.73; 53.45 |
0.28 |
-8.23 |
0.16 |
11.32 |
siRNA |
2ZI0 |
19!C:1!D |
U:A |
WC [cWW][XX] |
10.46 |
60.85; 54.85 |
6.0 |
-9.08 |
0.56 |
15.45 |