Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2ZUF
BPC Identified: 30
Ambiguities: 0
tRNA |
2ZUF |
901!B:972!B |
G:C |
Wb [---][-] |
10.68 |
46.04; 62.02 |
15.98 |
-3.3 |
0.24 |
12.29 |
tRNA |
2ZUF |
902!B:971!B |
G:C |
WC [cWW][XIX] |
10.73 |
52.2; 55.05 |
2.85 |
-3.8 |
0.4 |
16.75 |
tRNA |
2ZUF |
903!B:970!B |
A:U |
WC [cWW][XX] |
10.26 |
56.94; 58.62 |
1.68 |
-2.23 |
0.07 |
3.98 |
tRNA |
2ZUF |
904!B:969!B |
C:G |
WC [cWW][XIX] |
10.72 |
54.35; 54.25 |
0.1 |
-9.48 |
0.19 |
11.84 |
tRNA |
2ZUF |
905!B:968!B |
C:G |
WC [cWW][XIX] |
10.59 |
53.01; 53.24 |
0.23 |
-2.46 |
0.21 |
7.69 |
tRNA |
2ZUF |
906!B:967!B |
G:C |
WC [cWW][XIX] |
11.02 |
51.2; 51.3 |
0.1 |
-12.38 |
0.14 |
17.31 |
tRNA |
2ZUF |
907!B:966!B |
G:C |
WC [cWW][XIX] |
10.47 |
57.64; 52.64 |
5.0 |
-13.5 |
0.19 |
16.11 |
tRNA |
2ZUF |
908!B:921!B |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.5 |
92.3; 56.37 |
35.94 |
160.89 |
0.38 |
15.8 |
tRNA |
2ZUF |
908!B:914!B |
U:A |
rH_1 [tWH][XXIV] |
9.92 |
30.27; 18.55 |
11.72 |
172.68 |
0.02 |
5.14 |
tRNA |
2ZUF |
910!B:945!B |
G:G |
pS_1 [cSH][-] |
8.52 |
32.31; 128.97 |
96.66 |
3.72 |
0.15 |
30.12 |
tRNA |
2ZUF |
910!B:925!B |
G:C |
WC [cWW][XIX] |
10.5 |
54.71; 53.99 |
0.72 |
-5.62 |
0.01 |
10.64 |
tRNA |
2ZUF |
911!B:924!B |
C:G |
WC [cWW][XIX] |
10.65 |
52.34; 56.24 |
3.9 |
-1.14 |
0.02 |
2.67 |
tRNA |
2ZUF |
912!B:923!B |
C:G |
WC [cWW][XIX] |
10.45 |
57.49; 55.59 |
1.9 |
3.94 |
0.06 |
0.18 |
tRNA |
2ZUF |
913!B:922!B |
U:G |
Wb [cWW][XXVIII] |
10.23 |
72.6; 39.19 |
33.41 |
-3.92 |
0.26 |
7.52 |
tRNA |
2ZUF |
914!B:921!B |
A:A |
pfS [cSW][-] |
9.57 |
33.35; 119.8 |
86.45 |
-14.05 |
0.31 |
13.34 |
tRNA |
2ZUF |
915!B:948!B |
G:C |
rWb [tWW][XXII] |
10.39 |
38.59; 64.66 |
26.07 |
-172.23 |
0.17 |
5.74 |
tRNA |
2ZUF |
918!B:955!B |
G:U |
fS_1 [tSW][-] |
8.94 |
27.18; 104.94 |
77.76 |
-148.32 |
0.74 |
29.73 |
tRNA |
2ZUF |
919!B:956!B |
G:C |
WC [cWW][XIX] |
10.01 |
66.57; 53.52 |
13.05 |
-20.88 |
0.95 |
36.49 |
tRNA |
2ZUF |
927!B:943!B |
G:C |
WC [cWW][XIX] |
10.54 |
52.79; 57.91 |
5.12 |
-13.22 |
0.49 |
24.51 |
tRNA |
2ZUF |
928!B:942!B |
C:G |
WC [cWW][XIX] |
10.75 |
55.97; 56.18 |
0.22 |
-7.08 |
0.19 |
20.07 |
tRNA |
2ZUF |
929!B:941!B |
G:C |
WC [cWW][XIX] |
10.61 |
54.42; 56.61 |
2.19 |
-1.06 |
0.25 |
11.87 |
tRNA |
2ZUF |
930!B:940!B |
G:C |
WC [cWW][XIX] |
10.54 |
51.99; 55.64 |
3.66 |
-4.15 |
0.43 |
17.96 |
tRNA |
2ZUF |
931!B:939!B |
C:G |
WC [cWW][XIX] |
10.54 |
57.3; 54.59 |
2.71 |
-0.45 |
0.42 |
13.86 |
tRNA |
2ZUF |
949!B:965!B |
C:G |
WC [cWW][XIX] |
10.72 |
55.51; 54.53 |
0.98 |
-2.88 |
0.05 |
7.9 |
tRNA |
2ZUF |
950!B:964!B |
G:C |
WC [cWW][XIX] |
10.77 |
51.99; 51.13 |
0.86 |
-4.68 |
0.1 |
4.35 |
tRNA |
2ZUF |
951!B:963!B |
G:C |
WC [cWW][XIX] |
10.58 |
54.9; 53.56 |
1.33 |
-5.12 |
0.15 |
10.58 |
tRNA |
2ZUF |
952!B:962!B |
G:C |
WC [cWW][XIX] |
10.67 |
52.51; 52.66 |
0.15 |
-8.11 |
0.18 |
13.63 |
tRNA |
2ZUF |
953!B:961!B |
G:C |
WC [cWW][XIX] |
10.47 |
54.35; 55.42 |
1.07 |
-11.36 |
0.64 |
19.5 |
tRNA |
2ZUF |
954!B:958!B |
U:A |
rH_1 [tWH][XXIV] |
9.52 |
31.06; 20.39 |
10.67 |
165.75 |
0.35 |
13.32 |
tRNA |
2ZUF |
955!B:957!B |
U:A |
S(sb:O2*-N7) [---][-] |
6.55 |
80.51; 37.24 |
43.27 |
-169.23 |
1.08 |
34.98 |