Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 357D
BPC Identified: 24
Ambiguities: 0
rRNA |
357D |
1!A:119!C |
U:A |
WC [cWW][XX] |
9.88 |
55.65; 66.24 |
10.59 |
-8.2 |
0.31 |
17.8 |
rRNA |
357D |
2!A:118!C |
G:C |
WC [cWW][XIX] |
10.65 |
57.25; 51.2 |
6.05 |
5.72 |
0.16 |
10.09 |
rRNA |
357D |
3!A:117!C |
C:G |
WC [cWW][XIX] |
10.48 |
53.12; 50.18 |
2.94 |
-3.86 |
0.3 |
19.94 |
rRNA |
357D |
4!A:116!C |
C:G |
WC [cWW][XIX] |
10.48 |
58.62; 56.51 |
2.11 |
7.92 |
0.01 |
12.56 |
rRNA |
357D |
5!A:115!C |
U:A |
WC [cWW][XX] |
10.44 |
55.83; 57.98 |
2.15 |
-12.66 |
0.12 |
28.85 |
rRNA |
357D |
6!A:114!C |
G:C |
WC [cWW][XIX] |
10.85 |
53.98; 51.05 |
2.93 |
-5.3 |
0.22 |
13.96 |
rRNA |
357D |
7!A:113!C |
G:C |
WC [cWW][XIX] |
10.54 |
53.97; 58.3 |
4.33 |
9.96 |
0.28 |
14.48 |
rRNA |
357D |
8!A:112!C |
C:G |
WC [cWW][XIX] |
10.84 |
49.98; 50.63 |
0.64 |
14.08 |
1.11 |
8.81 |
rRNA |
357D |
9!A:111!C |
G:U |
Wb [cWW][XXVIII] |
11.08 |
35.9; 57.11 |
21.21 |
-10.51 |
0.86 |
5.15 |
rRNA |
357D |
10!A:110!C |
G:C |
WC [cWW][XIX] |
10.79 |
51.74; 52.66 |
0.91 |
-14.03 |
0.01 |
17.31 |
rRNA |
357D |
70!B:106!C |
C:G |
WC [cWW][XIX] |
10.93 |
53.86; 50.4 |
3.46 |
-0.36 |
0.13 |
4.59 |
rRNA |
357D |
71!B:105!C |
C:G |
WC [cWW][XIX] |
10.45 |
56.4; 55.01 |
1.39 |
1.76 |
0.07 |
4.9 |
rRNA |
357D |
72!B:104!C |
G:A |
S [tSH][XI] |
9.71 |
98.42; 8.15 |
90.28 |
31.51 |
0.12 |
9.35 |
rRNA |
357D |
73!B:103!C |
A:U |
rH_1 [tWH][XXIV] |
9.55 |
14.12; 32.68 |
18.55 |
178.2 |
0.04 |
36.95 |
rRNA |
357D |
77!B:98!C |
U:G |
fS*_2 [---][-] |
10.64 |
20.14; 70.26 |
50.12 |
114.27 |
0.82 |
28.45 |
rRNA |
357D |
78!B:98!C |
A:G |
S [tSH][XI] |
9.78 |
8.29; 91.54 |
83.24 |
10.26 |
0.05 |
15.78 |
rRNA |
357D |
79!B:97!C |
G:C |
WC [cWW][XIX] |
10.37 |
54.59; 52.99 |
1.6 |
22.88 |
0.02 |
35.8 |
rRNA |
357D |
80!B:96!C |
U:G |
Wb [cWW][XXVIII] |
10.39 |
74.81; 35.74 |
39.07 |
17.35 |
0.29 |
23.21 |
rRNA |
357D |
81!B:95!C |
G:U |
Wb [cWW][XXVIII] |
10.5 |
46.6; 64.08 |
17.48 |
-1.04 |
0.17 |
4.06 |
rRNA |
357D |
82!B:94!C |
U:A |
WC [cWW][XX] |
10.34 |
56.77; 61.95 |
5.18 |
-5.43 |
0.42 |
14.16 |
rRNA |
357D |
83!B:93!C |
G:C |
WC [cWW][XIX] |
10.49 |
51.2; 54.74 |
3.54 |
-3.43 |
0.18 |
20.66 |
rRNA |
357D |
84!B:92!C |
G:C |
WC [cWW][XIX] |
10.76 |
48.26; 53.17 |
4.91 |
4.95 |
0.05 |
7.9 |
rRNA |
357D |
85!B:91!C |
G:C |
WC [cWW][XIX] |
10.88 |
47.05; 53.9 |
6.85 |
-8.29 |
0.0 |
11.76 |
rRNA |
357D |
86!B:90!C |
G:C |
WC [cWW][XIX] |
10.81 |
57.4; 55.02 |
2.38 |
-1.27 |
0.27 |
12.93 |