Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 359D
BPC Identified: 20
Ambiguities: 0
| HH_ribozyme |
359D |
25!A:15!B |
G:C |
WC [cWW][XIX] |
10.98 |
56.35; 53.21 |
3.14 |
-14.15 |
0.43 |
17.01 |
| HH_ribozyme |
359D |
24!A:14!B |
U:A |
WC [cWW][XX] |
10.56 |
55.74; 61.34 |
5.61 |
-14.98 |
0.02 |
16.36 |
| HH_ribozyme |
359D |
23!A:13!B |
G:C |
WC [cWW][XIX] |
10.59 |
55.45; 48.76 |
6.69 |
-10.29 |
0.24 |
9.6 |
| HH_ribozyme |
359D |
22!A:12!B |
G:C |
WC [cWW][XIX] |
10.35 |
54.2; 58.82 |
4.61 |
-6.23 |
0.63 |
13.16 |
| HH_ribozyme |
359D |
21!A:11!B |
U:A |
WC [cWW][XX] |
10.23 |
55.26; 58.3 |
3.04 |
-2.75 |
0.08 |
13.5 |
| HH_ribozyme |
359D |
30!A:170!B |
C:C |
Wb [cWW][-] |
8.25 |
78.56; 50.9 |
27.67 |
-13.99 |
0.96 |
33.15 |
| HH_ribozyme |
359D |
40!A:60!A |
U:A |
S(sb:O2*-N7) [---][-] |
6.17 |
80.54; 46.66 |
33.88 |
-178.65 |
1.88 |
33.77 |
| HH_ribozyme |
359D |
70!A:140!B |
U:A |
pfS [cSW][-] |
9.46 |
123.32; 39.79 |
83.53 |
-8.25 |
0.03 |
30.75 |
| HH_ribozyme |
359D |
80!A:130!B |
G:A |
S [tSH][XI] |
9.17 |
103.49; 8.19 |
95.3 |
8.62 |
0.79 |
26.99 |
| HH_ribozyme |
359D |
90!A:120!B |
A:G |
S [tSH][XI] |
9.55 |
8.82; 91.98 |
83.16 |
-126.76 |
0.33 |
16.65 |
| HH_ribozyme |
359D |
101!A:111!B |
G:C |
WC [cWW][XIX] |
10.12 |
53.68; 55.94 |
2.26 |
-9.57 |
0.02 |
8.83 |
| HH_ribozyme |
359D |
102!A:112!B |
G:C |
WC [cWW][XIX] |
10.71 |
50.51; 52.13 |
1.62 |
-8.87 |
0.14 |
9.69 |
| HH_ribozyme |
359D |
103!A:113!B |
C:G |
WC [cWW][XIX] |
10.63 |
50.14; 52.11 |
1.97 |
-18.43 |
0.2 |
13.4 |
| HH_ribozyme |
359D |
104!A:114!B |
C:G |
WC [cWW][XIX] |
10.97 |
51.47; 54.34 |
2.87 |
-17.74 |
0.57 |
10.01 |
| HH_ribozyme |
359D |
151!B:161!B |
A:U |
WC_mo [cWW][XX] |
12.89 |
38.57; 34.45 |
4.13 |
10.01 |
0.37 |
20.56 |
| HH_ribozyme |
359D |
152!B:162!B |
C:G |
WC [cWW][XIX] |
10.71 |
49.81; 51.32 |
1.51 |
-24.5 |
0.41 |
16.44 |
| HH_ribozyme |
359D |
153!B:163!B |
U:A |
WC [cWW][XX] |
10.55 |
53.29; 58.57 |
5.28 |
-15.74 |
0.32 |
13.74 |
| HH_ribozyme |
359D |
154!B:164!B |
C:G |
WC [cWW][XIX] |
10.56 |
54.94; 52.86 |
2.08 |
0.16 |
0.41 |
10.47 |
| HH_ribozyme |
359D |
31L!B:34L!B |
G:A |
S_mo [tSH][XI] |
9.29 |
90.92; 22.3 |
68.62 |
-147.44 |
0.17 |
23.0 |
| HH_ribozyme |
359D |
161!B:170!B |
U:C |
S(sp:O2*-O2P) [---][-] |
7.64 |
133.53; 91.74 |
41.79 |
51.72 |
2.19 |
67.49 |