Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 379D
BPC Identified: 13
Ambiguities: 0
| HH_ribozyme |
379D |
24!A:14!B |
U:A |
WC [cWW][XX] |
11.24 |
48.99; 54.72 |
5.74 |
-15.83 |
0.05 |
20.49 |
| HH_ribozyme |
379D |
23!A:13!B |
G:C |
WC_Mo [cWW][XIX] |
10.81 |
57.19; 60.92 |
3.73 |
-16.76 |
0.02 |
21.89 |
| HH_ribozyme |
379D |
22!A:12!B |
G:C |
WC [cWW][XIX] |
9.81 |
53.2; 66.81 |
13.61 |
-21.35 |
0.39 |
29.11 |
| HH_ribozyme |
379D |
21!A:11!B |
U:A |
WC [cWW][XX] |
10.28 |
60.0; 53.77 |
6.23 |
-10.47 |
0.34 |
9.31 |
| HH_ribozyme |
379D |
40!A:60!A |
U:A |
S(sb:O2*-N7) [---][-] |
6.51 |
75.19; 33.45 |
41.75 |
-152.51 |
2.2 |
72.13 |
| HH_ribozyme |
379D |
80!A:130!B |
G:A |
S [tSH][XI] |
8.58 |
106.75; 17.94 |
88.8 |
-39.99 |
0.29 |
28.59 |
| HH_ribozyme |
379D |
102!A:112!B |
G:C |
WC [cWW][XIX] |
10.33 |
56.12; 46.47 |
9.65 |
-7.13 |
0.2 |
15.35 |
| HH_ribozyme |
379D |
103!A:113!B |
C:G |
WC [cWW][XIX] |
10.47 |
54.24; 41.96 |
12.29 |
-15.6 |
0.02 |
30.52 |
| HH_ribozyme |
379D |
151!B:161!B |
A:U |
WC [cWW][XX] |
11.85 |
35.48; 31.55 |
3.93 |
-41.05 |
0.15 |
84.11 |
| HH_ribozyme |
379D |
152!B:162!B |
C:G |
Wb* [---][-] |
10.56 |
53.83; 69.32 |
15.49 |
-30.28 |
0.39 |
34.18 |
| HH_ribozyme |
379D |
153!B:163!B |
U:A |
WC [cWW][XX] |
11.7 |
50.06; 46.95 |
3.1 |
-4.32 |
0.12 |
8.37 |
| HH_ribozyme |
379D |
154!B:164!B |
C:G |
WC_Mo [cWW][XIX] |
10.11 |
72.1; 65.78 |
6.32 |
-17.98 |
0.39 |
29.19 |
| HH_ribozyme |
379D |
31!B:34!B |
G:A |
S [tSH][XI] |
9.95 |
82.22; 10.16 |
72.06 |
157.11 |
0.11 |
19.73 |